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    EPC1-AS1 EPC1 antisense RNA 1 [ Homo sapiens (human) ]

    Gene ID: 102031319, updated on 10-Dec-2024

    Summary

    Official Symbol
    EPC1-AS1provided by HGNC
    Official Full Name
    EPC1 antisense RNA 1provided by HGNC
    Primary source
    HGNC:HGNC:50717
    See related
    Ensembl:ENSG00000229327 AllianceGenome:HGNC:50717
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

    See EPC1-AS1 in Genome Data Viewer
    Location:
    10p11.22
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (32347364..32374488)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (32376503..32403591)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (32636292..32663416)

    Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene ReSE screen-validated silencer GRCh37_chr10:32485087-32485280 Neighboring gene Sharpr-MPRA regulatory regions 2209 and 5551 Neighboring gene peptidylprolyl isomerase A pseudogene 31 Neighboring gene ReSE screen-validated silencer GRCh37_chr10:32536341-32536558 Neighboring gene H3K27ac hESC enhancer GRCh37_chr10:32542436-32542936 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2284 Neighboring gene ribosomal protein S24 pseudogene 13 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3245 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2285 Neighboring gene enhancer of polycomb homolog 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3246 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2288 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2287 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3247 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2286 Neighboring gene H3K27ac hESC enhancer GRCh37_chr10:32667292-32667792 Neighboring gene H3K27ac hESC enhancer GRCh37_chr10:32667793-32668293 Neighboring gene ReSE screen-validated silencer GRCh37_chr10:32668668-32668769 Neighboring gene RNA, U6 small nuclear 1244, pseudogene Neighboring gene uncharacterized LOC101929431 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3248 Neighboring gene coiled-coil domain containing 7

    Genomic regions, transcripts, and products

    Expression

    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Phenotypes

    EBI GWAS Catalog

    Description
    A genome-wide association study of female sexual dysfunction.
    EBI GWAS Catalog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_104163.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL391839, BX107541
      Related
      ENST00000417447.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

      Range
      32347364..32374488
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060934.1 Alternate T2T-CHM13v2.0

      Range
      32376503..32403591
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)