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    LINC01237 long intergenic non-protein coding RNA 1237 [ Homo sapiens (human) ]

    Gene ID: 101927289, updated on 10-Dec-2024

    Summary

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    Official Symbol
    LINC01237provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 1237provided by HGNC
    Primary source
    HGNC:HGNC:49793
    See related
    Ensembl:ENSG00000233806 AllianceGenome:HGNC:49793
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    LINC01238
    Expression
    Broad expression in appendix (RPKM 1.3), spleen (RPKM 1.2) and 22 other tissues See more
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    Genomic context

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    See LINC01237 in Genome Data Viewer
    Location:
    2q37.3
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (241881363..242078722)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (242383553..242589193)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (242823514..243020873)

    Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:242813965-242814521 Neighboring gene uncharacterized LOC105373978 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:242822944-242823534 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:242842086-242842730 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:242842731-242843374 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:242843375-242844020 Neighboring gene receptor transporter protein 5 (putative) Neighboring gene family with sequence similarity 240 member C Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:242884151-242884650 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:242892163-242892811 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:242892812-242893459 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:242907927-242908434 Neighboring gene long intergenic non-protein coding RNA 1238 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:242927157-242927693 Neighboring gene Neanderthal introgressed variant-containing enhancers experimental_58196 and experimental_58198 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr2:242946994-242947615 Neighboring gene uncharacterized FLJ38379 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:242975433-242975936 Neighboring gene uncharacterized LOC105373980 Neighboring gene long intergenic non-protein coding RNA 1880 Neighboring gene Sharpr-MPRA regulatory region 9157 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:243005518-243006194 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:243006195-243006872 Neighboring gene long intergenic non-protein coding RNA 3100 Neighboring gene long intergenic non-protein coding RNA 1881 Neighboring gene capicua transcriptional repressor pseudogene 10

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

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    Other Names

    • long intergenic non-protein coding RNA 1238

    Clone Names

    • AC131097.3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_110220.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      BG772076, DA781142
      Related
      ENST00000415434.5

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

      Range
      241881363..242078722
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCh38.p14 ALT_REF_LOCI_1

    Genomic

    1. NT_187523.1 Reference GRCh38.p14 ALT_REF_LOCI_1

      Range
      4619..122792
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCh38.p14 ALT_REF_LOCI_1

    Genomic

    1. NT_187527.1 Reference GRCh38.p14 ALT_REF_LOCI_1

      Range
      93461..94735
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCh38.p14 ALT_REF_LOCI_2

    Genomic

    1. NT_187647.1 Reference GRCh38.p14 ALT_REF_LOCI_2

      Range
      4619..122432
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060926.1 Alternate T2T-CHM13v2.0

      Range
      242383553..242589193
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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