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    1700016L21Rik RIKEN cDNA 1700016L21 gene [ Mus musculus (house mouse) ]

    Gene ID: 72208, updated on 22-Oct-2024

    Summary

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    Official Symbol
    1700016L21Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 1700016L21 geneprovided by MGI
    Primary source
    MGI:MGI:1919458
    See related
    Ensembl:ENSMUSG00000101483 AllianceGenome:MGI:1919458
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Jr3; DCKO; DTR-GFP; DTR-GRP; CD11c-DTR; Tg(Itgax-DTR/EGFP)57Lan
    Expression
    Restricted expression toward testis adult (RPKM 4.0) See more
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    Genomic context

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    See 1700016L21Rik in Genome Data Viewer
    Location:
    1; 1 C5
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (80423649..80453377)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (80445932..80475660)

    Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E1998 Neighboring gene STARR-seq mESC enhancer starr_01458 Neighboring gene STARR-positive B cell enhancer ABC_E11075 Neighboring gene STARR-seq mESC enhancer starr_01459 Neighboring gene STARR-seq mESC enhancer starr_01460 Neighboring gene predicted gene, 39667 Neighboring gene STARR-positive B cell enhancer mm9_chr1:80415486-80415786 Neighboring gene GLE1 RNA export mediator pseudogene Neighboring gene predicted gene, 38673 Neighboring gene dedicator of cytokinesis 10 Neighboring gene STARR-seq mESC enhancer starr_01461 Neighboring gene STARR-positive B cell enhancer ABC_E10018 Neighboring gene STARR-positive B cell enhancer mm9_chr1:80743907-80744208 Neighboring gene STARR-seq mESC enhancer starr_01462 Neighboring gene STARR-seq mESC enhancer starr_01463 Neighboring gene neuronal tyrosine-phophorylated phosphoinositide 3-kinase adaptor 2 Neighboring gene STARR-seq mESC enhancer starr_01464 Neighboring gene STARR-seq mESC enhancer starr_01465

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Renal dendritic cells stimulate IL-10 production and attenuate nephrotoxic nephritis. Scholz J, et al. J Am Soc Nephrol, 2008 Mar. PMID 18235094, Free PMC Article
    2. Radiotherapy promotes tumor-specific effector CD8+ T cells via dendritic cell activation. Gupta A, et al. J Immunol, 2012 Jul 15. PMID 22685313
    3. Kidney dendritic cell activation is required for progression of renal disease in a mouse model of glomerular injury. Heymann F, et al. J Clin Invest, 2009 May. PMID 19381017, Free PMC Article
    4. Selective ablation of bone marrow-derived dendritic cells increases amyloid plaques in a mouse Alzheimer's disease model. Butovsky O, et al. Eur J Neurosci, 2007 Jul. PMID 17623022
    5. CD11c.DTR mice develop a fatal fulminant myocarditis after local or systemic treatment with diphtheria toxin. Männ L, et al. Eur J Immunol, 2016 Aug. PMID 27184067

    See all (381) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    General gene information

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    Markers

    Other Names

    • CD11c-DTR/GFP
    • CD11c/DTR Tg
    • CD11cDTR tg
    • Tg(Itgax-DTR/GFP)57Lan
    • Tg<.Itgax-DTR/EGFP.57>Lan
    • Tg<Itgax-DTR/EGFP.57>Lan

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_040460.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC132387, AK006047
      Related
      ENSMUST00000187497.2

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000067.7 Reference GRCm39 C57BL/6J

      Range
      80423649..80453377
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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