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    DUF1997 family protein, putative (DUF1997) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 829239, updated on 18-Sep-2024

    Summary

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    Official Full Name
    DUF1997 family protein, putative (DUF1997)
    Primary source
    TAIR:AT4G31115
    Locus tag
    AT4G31115
    See related
    Araport:AT4G31115
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    6
    Sequence:
    Chromosome: 4; NC_003075.7 (15130075..15132035)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene wall-associated kinase Neighboring gene Wall-associated kinase family protein Neighboring gene SHK1 binding protein 1 Neighboring gene keratin-associated protein (DUF1218) Neighboring gene O-Glycosyl hydrolases family 17 protein Neighboring gene endonuclease V family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001125612.1
    NM_179147.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    DUF1997 family protein, putative (DUF1997)
    NP_001119084.1
    • Protein of unknown function (DUF1997); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1997 (InterPro:IPR018971); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1997) (TAIR:AT5G04440.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_849478.1
    • Protein of unknown function (DUF1997); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1997 (InterPro:IPR018971); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1997) (TAIR:AT5G04440.1); Has 178 Blast hits to 178 proteins in 45 species: Archae - 0; Bacteria - 51; Metazoa - 0; Fungi - 0; Plants - 75; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      15130075..15132035
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001125612.1 → NP_001119084.1  DUF1997 family protein, putative (DUF1997) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001119084.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UU49, B3H5W4
      Conserved Domains (1) summary
      pfam09366
      Location:103 → 262
      DUF1997; Protein of unknown function (DUF1997)

    2. NM_179147.1 → NP_849478.1  DUF1997 family protein, putative (DUF1997) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_849478.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UWD2, Q8RY26
      Conserved Domains (1) summary
      pfam09366
      Location:79 → 238
      DUF1997; Protein of unknown function (DUF1997)
    Nucleotide Protein
    Heading Accession and Version

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