slmapb sarcolemma associated protein b [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: slmapbprovided by ZNC
Official Full Name: sarcolemma associated protein bprovided by ZNC
Primary source: ZFIN:ZDB-GENE-040426-809
See related: Ensembl:ENSDARG00000020764 AllianceGenome:ZFIN:ZDB-GENE-040426-809
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: slmap; zgc:55817
Summary: Predicted to be located in membrane. Is expressed in epidermis; median fin fold; nervous system; neural crest; and pharyngeal arch 3-7 skeleton. Orthologous to human SLMAP (sarcolemma associated protein). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs: all
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Genomic context

Location:: chromosome: 23

Exon count:: 10

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	23	NC_007134.7 (19590148..19604407)
105	previous assembly	GRCz10 (GCF_000002035.5)	23	NC_007134.6 (19663722..19678070)

Chromosome 23 - NC_007134.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Component	Evidence Code	Pubs
located_in membrane	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: sarcolemma associated protein b

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_200177.1 → NP_956471.1 sarcolemma associated protein b

See identical proteins and their annotated locations for NP_956471.1

Status: PROVISIONAL

Source sequence(s)

BC045462

UniProtKB/TrEMBL

Q7ZVP6

Related

ENSDARP00000024693.6, ENSDART00000021231.8

Conserved Domains (1) summary

TIGR02168
Location:66 → 350

SMC_prok_B; chromosome segregation protein SMC, common bacterial type

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

NC_007134.7 Reference GRCz11 Primary Assembly

Range

19590148..19604407

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_005162050.5 → XP_005162107.1 sarcolemma associated protein b isoform X1

UniProtKB/TrEMBL

A0A8M2B8Z6

Conserved Domains (1) summary

TIGR02168
Location:66 → 352

SMC_prok_B; chromosome segregation protein SMC, common bacterial type