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    armc5 armadillo repeat containing 5 [ Danio rerio (zebrafish) ]

    Gene ID: 569910, updated on 9-Dec-2024

    Summary

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    Official Symbol
    armc5provided by ZNC
    Official Full Name
    armadillo repeat containing 5provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-7382
    See related
    Ensembl:ENSDARG00000078083 AllianceGenome:ZFIN:ZDB-GENE-030131-7382
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    wu:fj13a12
    Summary
    Predicted to be involved in anatomical structure morphogenesis. Predicted to be active in cytosol. Human ortholog(s) of this gene implicated in ACTH-independent macronodular adrenal hyperplasia 2. Orthologous to human ARMC5 (armadillo repeat containing 5). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See armc5 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 3 NC_007114.7 (31043480..31058163, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 3 NC_007114.6 (30912638..30927348, complement)

    Chromosome 3 - NC_007114.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100001051 Neighboring gene cytochrome c oxidase subunit 6A2 Neighboring gene si:dkey-66i24.7 Neighboring gene uncharacterized LOC569097

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    3. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Process Evidence Code Pubs
    involved_in anatomical structure morphogenesis IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in animal organ development IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cytosol IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    armadillo repeat-containing protein 5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007114.7 Reference GRCz11 Primary Assembly

      Range
      31043480..31058163 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021474093.2 → XP_021329768.1  armadillo repeat-containing protein 5

      UniProtKB/TrEMBL
      A0A8M9PRW1, U3JA44
      Related
      ENSDARP00000127109.1, ENSDART00000152901.2
      Conserved Domains (1) summary
      sd00043
      Location:136 → 170
      ARM; armadillo repeat [structural motif]

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018394534.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      116742..131049 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_693324.9 → XP_698416.4  armadillo repeat-containing protein 5

      UniProtKB/TrEMBL
      A0A8N7T8J6
      Conserved Domains (1) summary
      sd00043
      Location:136 → 170
      ARM; armadillo repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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