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    r3hdm1 R3H domain containing 1 [ Danio rerio (zebrafish) ]

    Gene ID: 560062, updated on 9-Dec-2024

    Summary

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    Official Symbol
    r3hdm1provided by ZNC
    Official Full Name
    R3H domain containing 1provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-7119
    See related
    Ensembl:ENSDARG00000101458 AllianceGenome:ZFIN:ZDB-GENE-030131-7119
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fj35h04; fk85b04; sb:eu460; id:ibd5043; wu:fj35h04; wu:fk85b04; si:ch73-60i13.2
    Summary
    Is expressed in forebrain; hindbrain; olfactory placode; and peripheral olfactory organ. Orthologous to human R3HDM1 (R3H domain containing 1). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See r3hdm1 in Genome Data Viewer
    Location:
    chromosome: 22
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 22 NC_007133.7 (12361278..12391284)
    105 previous assembly GRCz10 (GCF_000002035.5) 22 NC_007133.6 (12318706..12366507)

    Chromosome 22 - NC_007133.7Genomic Context describing neighboring genes Neighboring gene zinc finger, RAN-binding domain containing 3 Neighboring gene uncharacterized LOC137487200 Neighboring gene microRNA 128-1 Neighboring gene uncharacterized LOC103909565 Neighboring gene Rho family GTPase 3a

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Gene expression profiling of granule cells and Purkinje cells in the zebrafish cerebellum. Takeuchi M, et al. J Comp Neurol, 2017 May 1. PMID 27615194
    2. A gene expression screen in zebrafish embryogenesis. Kudoh T, et al. Genome Res, 2001 Dec. PMID 11731487

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • KIAA0029

    General protein information

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    Preferred Names
    R3H domain-containing protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007133.7 Reference GRCz11 Primary Assembly

      Range
      12361278..12391284
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021469571.2 → XP_021325246.1  R3H domain-containing protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8M9PSE0

    2. XM_021469573.2 → XP_021325248.1  R3H domain-containing protein 1 isoform X3

      UniProtKB/TrEMBL
      A0A8M9PEG8

    3. XM_021469572.2 → XP_021325247.1  R3H domain-containing protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A0R4IRP9, A0A8M9P4P6
      Related
      ENSDARP00000139514.1, ENSDART00000159614.2

    4. XM_068216438.1 → XP_068072539.1  R3H domain-containing protein 1 isoform X4

    5. XM_021469574.2 → XP_021325249.1  R3H domain-containing protein 1 isoform X5

      UniProtKB/TrEMBL
      A0A2R8PZR3, A0A8M9PK56
      Related
      ENSDARP00000145574.1, ENSDART00000189963.1

    6. XM_068216439.1 → XP_068072540.1  R3H domain-containing protein 1 isoform X7

      Related
      ENSDARP00000156328.1, ENSDART00000182483.1

    7. XM_021469575.2 → XP_021325250.1  R3H domain-containing protein 1 isoform X6

      UniProtKB/TrEMBL
      A0A8M9PVW9

    8. XM_021469576.2 → XP_021325251.1  R3H domain-containing protein 1 isoform X8

      UniProtKB/TrEMBL
      A0A8M9PSE5
    Nucleotide Protein Strain
    Heading Accession and Version

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