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    ciz1b cdkn1a interacting zinc finger protein 1b [ Danio rerio (zebrafish) ]

    Gene ID: 406846, updated on 9-Dec-2024

    Summary

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    Official Symbol
    ciz1bprovided by ZNC
    Official Full Name
    cdkn1a interacting zinc finger protein 1bprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-040426-2933
    See related
    Ensembl:ENSDARG00000089461 AllianceGenome:ZFIN:ZDB-GENE-040426-2933
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    ciz1; zgc:66467; wu:fi12g11; wu:fi27d02
    Summary
    Predicted to enable nucleic acid binding activity and zinc ion binding activity. Predicted to be active in nucleus. Orthologous to human CIZ1 (CDKN1A interacting zinc finger protein 1). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See ciz1b in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 5 NC_007116.7 (63645740..63663775, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 5 NC_007116.6 (62966869..62982607, complement)

    Chromosome 5 - NC_007116.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC137495528 Neighboring gene surfeit 4, like Neighboring gene dynamin 1b Neighboring gene regulator of G protein signaling 3b

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Zebrafish dnm1a gene plays a role in the formation of axons and synapses in the nervous tissue. Bragato C, et al. J Neurosci Res, 2023 Aug. PMID 37031448
    2. The zebrafish gene map defines ancestral vertebrate chromosomes. Woods IG, et al. Genome Res, 2005 Sep. PMID 16109975, Free PMC Article
    3. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    cdkn1a interacting zinc finger protein 1b
    Names
    CDKN1A interacting zinc finger protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_213525.1 → NP_998690.2  cdkn1a interacting zinc finger protein 1b

      Status: PROVISIONAL

      Source sequence(s)
      BC055672
      UniProtKB/TrEMBL
      A0A8M1PQD5, Q7SXB6
      Related
      ENSDARP00000097717.3, ENSDART00000111403.4
      Conserved Domains (3) summary
      COG5112
      Location:245 → 298
      UFD2; U1-like Zn-finger-containing protein [General function prediction only]
      sd00020
      Location:235 → 255
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam14968
      Location:172 → 363
      CCDC84; Coiled coil protein 84

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007116.7 Reference GRCz11 Primary Assembly

      Range
      63645740..63663775 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_068221134.1 → XP_068077235.1  cdkn1a interacting zinc finger protein 1b isoform X1

      UniProtKB/TrEMBL
      A0A8M9Q315, Q7SXB6
    Nucleotide Protein Strain
    Heading Accession and Version

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