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    si:ch211-113p18.3 si:ch211-113p18.3 [ Danio rerio (zebrafish) ]

    Gene ID: 559644, updated on 9-Dec-2024

    Summary

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    Official Symbol
    si:ch211-113p18.3provided by ZNC
    Official Full Name
    si:ch211-113p18.3provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-4983
    See related
    Ensembl:ENSDARG00000087835 AllianceGenome:ZFIN:ZDB-GENE-030131-4983
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fe17a11; wu:fe17a11
    Summary
    Predicted to enable DNA binding activity and metal ion binding activity. [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See si:ch211-113p18.3 in Genome Data Viewer
    Location:
    chromosome: 15
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 15 NC_007126.7 (8314929..8319983, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 15 NC_007126.6 (8338861..8344039, complement)

    Chromosome 15 - NC_007126.7Genomic Context describing neighboring genes Neighboring gene BTB and CNC homology 1, basic leucine zipper transcription factor 1 a Neighboring gene mitochondrial intermediate peptidase a Neighboring gene tumor necrosis factor receptor superfamily, member 19 Neighboring gene egl-9 family hypoxia-inducible factor 2 Neighboring gene transmembrane protein 160

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein si:ch211-113p18.3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007126.7 Reference GRCz11 Primary Assembly

      Range
      8314929..8319983 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_700376.9 → XP_705468.3  uncharacterized protein si:ch211-113p18.3

      UniProtKB/TrEMBL
      A0A8N7T8E4
      Related
      ENSDARP00000116673.1, ENSDART00000137552.2
    Nucleotide Protein Strain
    Heading Accession and Version

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