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    gpr107 G protein-coupled receptor 107 [ Danio rerio (zebrafish) ]

    Gene ID: 570589, updated on 9-Dec-2024

    Summary

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    Official Symbol
    gpr107provided by ZNC
    Official Full Name
    G protein-coupled receptor 107provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-061103-130
    See related
    Ensembl:ENSDARG00000103200 AllianceGenome:ZFIN:ZDB-GENE-061103-130
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fi85e04; wu:fi85e04; zgc:153685
    Summary
    Predicted to enable clathrin heavy chain binding activity. Predicted to be involved in clathrin-dependent endocytosis. Predicted to be active in Golgi apparatus; clathrin-coated vesicle; and membrane. Orthologous to human GPR107 (G protein-coupled receptor 107). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See gpr107 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 5 NC_007116.7 (32460451..32489796, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 5 NC_007116.6 (31860294..31889671, complement)

    Chromosome 5 - NC_007116.7Genomic Context describing neighboring genes Neighboring gene F-box and WD repeat domain containing 2 Neighboring gene neuronal calcium sensor 1a Neighboring gene NADPH dependent diflavin oxidoreductase 1 Neighboring gene N-terminal Xaa-Pro-Lys N-methyltransferase 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Identification of differentially expressed genes in the zebrafish hypothalamic-pituitary axis. Toro S, et al. Gene Expr Patterns, 2009 Apr. PMID 19166982, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    protein GPR107

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001080046.1 → NP_001073515.1  protein GPR107 precursor

      See identical proteins and their annotated locations for NP_001073515.1

      Status: PROVISIONAL

      Source sequence(s)
      BC125883
      UniProtKB/TrEMBL
      A0A8M9Q3Q5, A0JMH7
      Related
      ENSDARP00000130532.1, ENSDART00000168870.3
      Conserved Domains (1) summary
      pfam06814
      Location:204 → 498
      Lung_7-TM_R; Lung seven transmembrane receptor

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007116.7 Reference GRCz11 Primary Assembly

      Range
      32460451..32489796 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009301549.4 → XP_009299824.1  protein GPR107 isoform X1

      UniProtKB/TrEMBL
      A0A8M3ASE9, A0A8M9Q3Q5
      Conserved Domains (1) summary
      pfam06814
      Location:205 → 499
      Lung_7-TM_R; Lung seven transmembrane receptor
    Nucleotide Protein Strain
    Heading Accession and Version

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