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    p3h4 prolyl 3-hydroxylase family member 4 (inactive) [ Danio rerio (zebrafish) ]

    Gene ID: 570779, updated on 9-Dec-2024

    Summary

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    Official Symbol
    p3h4provided by ZNC
    Official Full Name
    prolyl 3-hydroxylase family member 4 (inactive)provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-1599
    See related
    Ensembl:ENSDARG00000104089 AllianceGenome:ZFIN:ZDB-GENE-030131-1599
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fb75g07; leprel4; wu:fb75g07; si:dkey-18f7.1
    Summary
    Predicted to contribute to collagen binding activity. Predicted to be involved in collagen fibril organization. Predicted to be active in endoplasmic reticulum. Orthologous to human P3H4 (prolyl 3-hydroxylase family member 4 (inactive)). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See p3h4 in Genome Data Viewer
    Location:
    chromosome: 19
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 19 NC_007130.7 (18420410..18498323, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 19 NC_007130.6 (18960460..19029722, complement)

    Chromosome 19 - NC_007130.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101885945 Neighboring gene uncharacterized LOC137488497 Neighboring gene FKBP prolyl isomerase 10a Neighboring gene uncharacterized LOC103909220 Neighboring gene ribosomal protein S18

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    2. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    contributes_to collagen binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in collagen fibril organization IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in endoplasmic reticulum IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    endoplasmic reticulum protein SC65
    Names
    leprecan-like 4
    prolyl 3-hydroxylase family member 4 (non-enzymatic)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001126438.1 → NP_001119910.1  endoplasmic reticulum protein SC65

      Status: PROVISIONAL

      Source sequence(s)
      BX927404
      UniProtKB/TrEMBL
      A0A0R4INE3, A0A8M1NJF3
      Related
      ENSDARP00000136982.1, ENSDART00000169489.2

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007130.7 Reference GRCz11 Primary Assembly

      Range
      18420410..18498323 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021468127.2 → XP_021323802.1  endoplasmic reticulum protein SC65 isoform X2

      UniProtKB/TrEMBL
      A0A8M9P1X6
      Conserved Domains (1) summary
      cl25425
      Location:232 → 295
      RNAP_largest_subunit_C; Largest subunit of RNA polymerase (RNAP), C-terminal domain

    2. XM_068215175.1 → XP_068071276.1  endoplasmic reticulum protein SC65 isoform X2

      UniProtKB/TrEMBL
      A0A8M9P1X6

    3. XM_009294166.4 → XP_009292441.1  endoplasmic reticulum protein SC65 isoform X1

      UniProtKB/TrEMBL
      A0A8M3AKX1
    Nucleotide Protein
    Heading Accession and Version

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