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    arrdc1a arrestin domain containing 1a [ Danio rerio (zebrafish) ]

    Gene ID: 100006005, updated on 9-Dec-2024

    Summary

    Official Symbol
    arrdc1aprovided by ZNC
    Official Full Name
    arrestin domain containing 1aprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030925-15
    See related
    Ensembl:ENSDARG00000068148 AllianceGenome:ZFIN:ZDB-GENE-030925-15
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    arrdc1; sb:cb786; zgc:92248; wu:fc25g09; wu:fi04h05; si:rp71-1o1.5
    Summary
    Predicted to enable ubiquitin protein ligase binding activity and ubiquitin-like ligase-substrate adaptor activity. Predicted to be involved in protein transport. Predicted to be active in cytoplasm. Is expressed in several structures, including ectoderm; mesoderm; presumptive ectoderm; pronephric duct; and sensory system. Orthologous to human ARRDC1 (arrestin domain containing 1). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
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    Genomic context

    See arrdc1a in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 5 NC_007116.7 (29516843..29531948, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 5 NC_007116.6 (28916690..28931795, complement)

    Chromosome 5 - NC_007116.7Genomic Context describing neighboring genes Neighboring gene calcium channel, voltage-dependent, N type, alpha 1B subunit, a Neighboring gene euchromatic histone-lysine N-methyltransferase 1a Neighboring gene P2Y purinoceptor 4 Neighboring gene negative elongation factor complex member B

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    General protein information

    Preferred Names
    arrestin domain-containing protein 1a
    Names
    arrestin domain containing 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001004561.1NP_001004561.1  arrestin domain-containing protein 1a

      See identical proteins and their annotated locations for NP_001004561.1

      Status: PROVISIONAL

      Source sequence(s)
      AL831768
      UniProtKB/TrEMBL
      A7YYD6, Q6ZM71
      Related
      ENSDARP00000089131.4, ENSDART00000098360.5
      Conserved Domains (2) summary
      pfam02752
      Location:162283
      Arrestin_C; Arrestin (or S-antigen), C-terminal domain
      cl22903
      Location:7139
      Arrestin_N; Arrestin (or S-antigen), N-terminal domain

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007116.7 Reference GRCz11 Primary Assembly

      Range
      29516843..29531948 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005171783.5XP_005171840.1  arrestin domain-containing protein 1a isoform X2

      UniProtKB/TrEMBL
      A0A8M2BJ09
      Conserved Domains (2) summary
      pfam02752
      Location:162283
      Arrestin_C; Arrestin (or S-antigen), C-terminal domain
      cl22903
      Location:7139
      Arrestin_N; Arrestin (or S-antigen), N-terminal domain
    2. XM_068221047.1XP_068077148.1  arrestin domain-containing protein 1a isoform X1