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    zgc:153935 zgc:153935 [ Danio rerio (zebrafish) ]

    Gene ID: 777611, updated on 9-Dec-2024

    Summary

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    Official Symbol
    zgc:153935provided by ZNC
    Official Full Name
    zgc:153935provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-061103-148
    See related
    Ensembl:ENSDARG00000036888 AllianceGenome:ZFIN:ZDB-GENE-061103-148
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Summary
    Predicted to act upstream of or within inflammatory response and innate immune response. [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See zgc:153935 in Genome Data Viewer
    Location:
    chromosome: 25
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 25 NC_007136.7 (27714932..27735926, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 25 NC_007136.6 (27271714..27295422, complement)

    Chromosome 25 - NC_007136.7Genomic Context describing neighboring genes Neighboring gene hyaluronoglucosaminidase 6 Neighboring gene si:ch211-91p5.3 Neighboring gene WASP like actin nucleation promoting factor a Neighboring gene leiomodin 2 (cardiac) a

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within inflammatory response IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within innate immune response IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein LOC777611

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001430958.1 → NP_001417887.1  uncharacterized protein LOC777611

      Status: VALIDATED

      Source sequence(s)
      CR381620
      UniProtKB/TrEMBL
      A0A8M9P6H5

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007136.7 Reference GRCz11 Primary Assembly

      Range
      27714932..27735926 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017354097.3 → XP_017209586.1  uncharacterized protein LOC777611 isoform X1

      UniProtKB/TrEMBL
      A0A8M9P6H5
      Conserved Domains (2) summary
      cd08330
      Location:335 → 411
      CARD_ASC_NALP1; Caspase activation and recruitment domain found in Human ASC, NALP1, and similar proteins
      pfam15112
      Location:9 → 313
      DUF4559; Domain of unknown function (DUF4559)

    2. XM_068217417.1 → XP_068073518.1  uncharacterized protein LOC777611 isoform X2

      UniProtKB/TrEMBL
      A0A8N7UYE3, A0JML0
      Related
      ENSDARP00000146474.1, ENSDART00000190154.1

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018395207.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      144938..152834 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001077719.1: Suppressed sequence

      Description
      NM_001077719.1: This RefSeq was removed because currently there is insufficient support for the transcript and the protein.
    Nucleotide Protein
    Heading Accession and Version

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