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    dop1b DOP1 leucine zipper like protein B [ Danio rerio (zebrafish) ]

    Gene ID: 393582, updated on 9-Dec-2024

    Summary

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    Official Symbol
    dop1bprovided by ZNC
    Official Full Name
    DOP1 leucine zipper like protein Bprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-040426-1195
    See related
    AllianceGenome:ZFIN:ZDB-GENE-040426-1195
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    dopey2; zgc:63622; wu:fc27d12
    Summary
    Predicted to act upstream of or within Golgi to endosome transport. Orthologous to human DOP1B (DOP1 leucine zipper like protein B). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See dop1b in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    39
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 9 NC_007120.7 (33154779..33195589)
    105 previous assembly GRCz10 (GCF_000002035.5) 9 NC_007120.6 (33343972..33384840)

    Chromosome 9 - NC_007120.7Genomic Context describing neighboring genes Neighboring gene solute carrier family 5 member 3b Neighboring gene ATP synthase peripheral stalk subunit OSCP Neighboring gene si:ch211-125e6.11 Neighboring gene si:ch211-125e6.12

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Dopey2 and Pcdh7 orchestrate the development of embryonic neural stem cells/ progenitors in zebrafish. Xiao Y, et al. iScience, 2023 Mar 17. PMID 36936789, Free PMC Article
    2. Identification of zygotic genes expressed at the midblastula transition in zebrafish. O'Boyle S, et al. Biochem Biophys Res Commun, 2007 Jun 29. PMID 17490614
    3. Hematopoietic gene expression profile in zebrafish kidney marrow. Song HD, et al. Proc Natl Acad Sci U S A, 2004 Nov 16. PMID 15520368, Free PMC Article
    4. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article
    5. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC63622

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within Golgi to endosome transport IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    DOP1 leucine zipper like protein B; protein dopey-2
    Names
    dopey family member 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007120.7 Reference GRCz11 Primary Assembly

      Range
      33154779..33195589
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017357831.3 → XP_017213320.1  protein dopey-2

      UniProtKB/TrEMBL
      A0A8M6Z8M9

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_200610.1: Suppressed sequence

      Description
      NM_200610.1: This RefSeq was removed because it contains the wrong CDS.
    Nucleotide Protein
    Heading Accession and Version

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