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    si:ch211-145c1.1 si:ch211-145c1.1 [ Danio rerio (zebrafish) ]

    Gene ID: 563686, updated on 4-Jan-2025

    Summary

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    Official Symbol
    si:ch211-145c1.1provided by ZNC
    Official Full Name
    si:ch211-145c1.1provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-070912-81
    See related
    Ensembl:ENSDARG00000042063 AllianceGenome:ZFIN:ZDB-GENE-070912-81
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Summary
    Predicted to enable carbohydrate binding activity. [provided by Alliance of Genome Resources, Jan 2025]
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    Genomic context

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    See si:ch211-145c1.1 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 9 NC_007120.7 (8290629..8296720, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 9 NC_007120.6 (8312299..8318390, complement)

    Chromosome 9 - NC_007120.7Genomic Context describing neighboring genes Neighboring gene myosin XVI Neighboring gene uncharacterized LOC108191363 Neighboring gene si:dkey-90l23.2 Neighboring gene si:dkey-90l23.1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    2. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables carbohydrate binding IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    L-rhamnose-binding lectin CSL2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007120.7 Reference GRCz11 Primary Assembly

      Range
      8290629..8296720 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_068223541.1 → XP_068079642.1  L-rhamnose-binding lectin CSL2 isoform X2

      Related
      ENSDARP00000156123.1, ENSDART00000180945.1

    2. XM_017357755.3 → XP_017213244.1  L-rhamnose-binding lectin CSL2 isoform X1

      UniProtKB/TrEMBL
      A0A8M6Z8I8, B0S5U6
      Related
      ENSDARP00000120984.1, ENSDART00000139867.3
    Nucleotide Protein Strain
    Heading Accession and Version

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