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    si:ch211-222k6.2 si:ch211-222k6.2 [ Danio rerio (zebrafish) ]

    Gene ID: 556142, updated on 9-Dec-2024

    Summary

    Official Symbol
    si:ch211-222k6.2provided by ZNC
    Official Full Name
    si:ch211-222k6.2provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-9038
    See related
    AllianceGenome:ZFIN:ZDB-GENE-030131-9038
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fa97c08; im:7054406; wu:fa97c08
    Summary
    Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
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    Genomic context

    See si:ch211-222k6.2 in Genome Data Viewer
    Location:
    chromosome: 22
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 22 NC_007133.7 (10053636..10056311, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 22 NC_007133.6 (10023954..10026650, complement)

    Chromosome 22 - NC_007133.7Genomic Context describing neighboring genes Neighboring gene zinc finger protein 502-like Neighboring gene si:ch211-222k6.1 Neighboring gene si:ch211-222k6.3 Neighboring gene uncharacterized LOC101886849

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    General gene information

    Markers

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
     

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001386816.1NP_001373745.1  zinc finger protein 2-like

      Status: VALIDATED

      Source sequence(s)
      BX324216
      UniProtKB/TrEMBL
      A0A8M2BLB1
      Conserved Domains (2) summary
      COG5048
      Location:37362
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:144164
      ZF_C2H2; C2H2 Zn finger [structural motif]

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007133.7 Reference GRCz11 Primary Assembly

      Range
      10053636..10056311 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_068216298.1XP_068072399.1  zinc finger protein 2-like isoform X1

      UniProtKB/TrEMBL
      A0A8M2BLB1