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    mcmdc2as mcmdc2 antisense lncRNA [ Danio rerio (zebrafish) ]

    Gene ID: 323848, updated on 12-Sep-2024

    Summary

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    Official Symbol
    mcmdc2asprovided by ZNC
    Official Full Name
    mcmdc2 antisense lncRNAprovided by ZNC
    Primary source
    ZFIN:ZDB-LINCRNAG-160518-1
    See related
    AllianceGenome:ZFIN:ZDB-LINCRNAG-160518-1
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fc11g08; fc35f05; wu:fc11g08; wu:fc35f05
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    Genomic context

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    See mcmdc2as in Genome Data Viewer
    Location:
    chromosome: 24
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 24 NC_007135.7 (23744432..23747453)
    105 previous assembly GRCz10 (GCF_000002035.5) 24 NC_007135.6 (23599258..23602279)

    Chromosome 24 - NC_007135.7Genomic Context describing neighboring genes Neighboring gene protein phosphatase 1, regulatory subunit 42 Neighboring gene minichromosome maintenance domain containing 2 Neighboring gene transcription factor 24 Neighboring gene serum/glucocorticoid regulated kinase family member 3 Neighboring gene v-myb avian myeloblastosis viral oncogene homolog-like 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_136892.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      EH440433

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007135.7 Reference GRCz11 Primary Assembly

      Range
      23744432..23747453
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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