U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    nitr1k novel immune-type receptor 1k [ Danio rerio (zebrafish) ]

    Gene ID: 60646, updated on 9-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    nitr1kprovided by ZNC
    Official Full Name
    novel immune-type receptor 1kprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-001106-5
    See related
    AllianceGenome:ZFIN:ZDB-GENE-001106-5
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    nitr1; nitr2; nitr1.3; nitr1.12; nitr1.26; nitr1.40; nitr1k_3; nitr1k_4
    Summary
    Predicted to be involved in response to bacterium. Predicted to be located in plasma membrane. Orthologous to human SIRPB2 (signal regulatory protein beta 2). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See nitr1k in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 7 NC_007118.7 (17496474..17522126)
    105 previous assembly GRCz10 (GCF_000002035.5) 7 NC_007118.6 (17242238..17284593)

    Chromosome 7 - NC_007118.7Genomic Context describing neighboring genes Neighboring gene novel immune-type receptor 3d Neighboring gene si:busm1-186f8.13, pseudogene Neighboring gene si:busm1-219h16.18, pseudogene Neighboring gene novel immune-type receptor 1f Neighboring gene uncharacterized LOC137487204 Neighboring gene novel immune-type receptor 1h

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Evolution of the zebrafish model: from development to immunity and infectious disease. Phelps HA, et al. Zebrafish, 2005. PMID 18248169
    2. Developmental and tissue-specific expression of NITRs. Yoder JA, et al. Immunogenetics, 2010 Feb. PMID 20012603, Free PMC Article
    3. The medaka novel immune-type receptor (NITR) gene clusters reveal an extraordinary degree of divergence in variable domains. Desai S, et al. BMC Evol Biol, 2008 Jun 19. PMID 18565225, Free PMC Article
    4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by ZFIN

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    LOW QUALITY PROTEIN: uncharacterized protein nitr1k; novel immune-type receptor 1k
    Names
    immune-type receptor
    novel immune-type receptor 1
    novel immune-type receptor 1.12
    novel immune-type receptor 1.26
    novel immune-type receptor 1.3
    novel immune-type receptor 2
    putative V-set and immunoglobulin domain-containing-like protein IGHV4OR15-8

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007118.7 Reference GRCz11 Primary Assembly

      Range
      17496474..17522126
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_068222431.1 → XP_068078532.1  LOW QUALITY PROTEIN: uncharacterized protein nitr1k

      UniProtKB/TrEMBL
      A0A8M9Q9D1

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_198348.3: Suppressed sequence

      Description
      NM_198348.3: This RefSeq was removed because currently there is insufficient support for the transcript and the protein.
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools