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    si:ch211-152c2.3 si:ch211-152c2.3 [ Danio rerio (zebrafish) ]

    Gene ID: 321322, updated on 9-Dec-2024

    Summary

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    Official Symbol
    si:ch211-152c2.3provided by ZNC
    Official Full Name
    si:ch211-152c2.3provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-9914
    See related
    Ensembl:ENSDARG00000045898 AllianceGenome:ZFIN:ZDB-GENE-030131-9914
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    cb612; sb:cb612; wu:fe05a06
    Summary
    Is expressed in several structures, including Kupffer's vesicle; forerunner cell group; neural plate; sensory system; and solid lens vesicle. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See si:ch211-152c2.3 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 4 NC_007115.7 (841999..845034)

    Chromosome 4 - NC_007115.7Genomic Context describing neighboring genes Neighboring gene microtubule-associated protein, RP/EB family, member 3b Neighboring gene dihydropyrimidinase like 5b Neighboring gene sine oculis binding protein homolog (Drosophila) b Neighboring gene crystallin beta-gamma domain containing 1b Neighboring gene melanocortin 2 receptor accessory protein 2b

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_007115.7 Chromosome 4 Reference GRCz11 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. 15000 unique zebrafish EST clusters and their future use in microarray for profiling gene expression patterns during embryogenesis. Lo J, et al. Genome Res, 2003 Mar. PMID 12618376, Free PMC Article
    2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    3. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_188798.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      BC159245, BX649468
      Related
      ENSDART00000067461.5

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007115.7 Reference GRCz11 Primary Assembly

      Range
      841999..845034
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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