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    si:ch73-103b9.2 si:ch73-103b9.2 [ Danio rerio (zebrafish) ]

    Gene ID: 100150067, updated on 9-Dec-2024

    Summary

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    Official Symbol
    si:ch73-103b9.2provided by ZNC
    Official Full Name
    si:ch73-103b9.2provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-070705-199
    See related
    Ensembl:ENSDARG00000092489 AllianceGenome:ZFIN:ZDB-GENE-070705-199
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Summary
    Orthologous to human C16orf46 (chromosome 16 open reading frame 46). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See si:ch73-103b9.2 in Genome Data Viewer
    Location:
    chromosome: 18
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 18 NC_007129.7 (29958638..29962545, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 18 NC_007129.6 (29980245..29984291, complement)

    Chromosome 18 - NC_007129.7Genomic Context describing neighboring genes Neighboring gene major histocompatibility complex class II DBB gene Neighboring gene ATM interactor Neighboring gene protein phosphatase 1 regulatory subunit 3E Neighboring gene si:ch211-220f16.2 Neighboring gene 5S ribosomal RNA

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized protein C16orf46 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001128400.1 → NP_001121872.1  uncharacterized protein C16orf46 homolog

      See identical proteins and their annotated locations for NP_001121872.1

      Status: PROVISIONAL

      Source sequence(s)
      CT573202
      UniProtKB/TrEMBL
      A0A8M2B5N6, A5WW45
      Related
      ENSDARP00000113174.1, ENSDART00000140661.3
      Conserved Domains (1) summary
      pfam15032
      Location:29 → 196
      DUF4529; Protein of unknown function (DUF4529)

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007129.7 Reference GRCz11 Primary Assembly

      Range
      29958638..29962545 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_068214702.1 → XP_068070803.1  uncharacterized protein C16orf46 homolog isoform X1

      UniProtKB/TrEMBL
      A0A8M2B5N6, A5WW45

    2. XM_005159182.5 → XP_005159239.1  uncharacterized protein C16orf46 homolog isoform X1

      See identical proteins and their annotated locations for XP_005159239.1

      UniProtKB/TrEMBL
      A0A8M2B5N6, A5WW45
      Conserved Domains (1) summary
      pfam15032
      Location:29 → 196
      DUF4529; Protein of unknown function (DUF4529)

    3. XM_005159181.5 → XP_005159238.1  uncharacterized protein C16orf46 homolog isoform X1

      See identical proteins and their annotated locations for XP_005159238.1

      UniProtKB/TrEMBL
      A0A8M2B5N6, A5WW45
      Conserved Domains (1) summary
      pfam15032
      Location:29 → 196
      DUF4529; Protein of unknown function (DUF4529)

    4. XM_005159183.5 → XP_005159240.1  uncharacterized protein C16orf46 homolog isoform X1

      See identical proteins and their annotated locations for XP_005159240.1

      UniProtKB/TrEMBL
      A0A8M2B5N6, A5WW45
      Conserved Domains (1) summary
      pfam15032
      Location:29 → 196
      DUF4529; Protein of unknown function (DUF4529)
    Nucleotide Protein Strain
    Heading Accession and Version

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