U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    zgc:172136 zgc:172136 [ Danio rerio (zebrafish) ]

    Gene ID: 566376, updated on 9-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    zgc:172136provided by ZNC
    Official Full Name
    zgc:172136provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-1008
    See related
    Ensembl:ENSDARG00000078741 AllianceGenome:ZFIN:ZDB-GENE-030131-1008
    Gene type
    protein coding
    RefSeq status
    PREDICTED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fb55g02; wu:fb55g02
    Summary
    Predicted to be involved in positive regulation of hippo signaling. Predicted to be located in cytoskeleton. Predicted to be active in cytoplasmic side of apical plasma membrane. Is expressed in several structures, including anterior axial hypoblast; lens placode; nervous system; optic primordium; and optic vesicle. Orthologous to human FRMD1 (FERM domain containing 1). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See zgc:172136 in Genome Data Viewer
    Location:
    chromosome: 13
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 13 NC_007124.7 (39236141..39271225)
    105 previous assembly GRCz10 (GCF_000002035.5) 13 NC_007124.6 (39110197..39145615)

    Chromosome 13 - NC_007124.7Genomic Context describing neighboring genes Neighboring gene collagen, type IX, alpha 1b Neighboring gene family with sequence similarity 135 member A Neighboring gene TAR (HIV-1) RNA binding protein 1 Neighboring gene probable methyltransferase TARBP1

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    4. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Process Evidence Code Pubs
    involved_in developmental process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    uncharacterized protein LOC566376
    Names
    FERM domain-containing protein 6-like

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001111187.1 → NP_001104657.1  uncharacterized protein LOC566376

      See identical proteins and their annotated locations for NP_001104657.1

      Status: PREDICTED

      Source sequence(s)
      BC155611
      UniProtKB/TrEMBL
      A0A8M1NGP5, A9JRC9
      Related
      ENSDARP00000098019.2, ENSDART00000111458.3
      Conserved Domains (4) summary
      smart00295
      Location:13 → 222
      B41; Band 4.1 homologues
      cd13185
      Location:215 → 323
      FERM_C_FRMD1_FRMD6; FERM domain C-lobe of FERM domain containing 1 and 6 proteins
      pfam00373
      Location:108 → 222
      FERM_M; FERM central domain
      pfam09379
      Location:13 → 75
      FERM_N; FERM N-terminal domain

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007124.7 Reference GRCz11 Primary Assembly

      Range
      39236141..39271225
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009307480.3 → XP_009305755.1  uncharacterized protein LOC566376 isoform X1

      UniProtKB/TrEMBL
      A0A8M3AZA5
      Conserved Domains (4) summary
      smart00295
      Location:13 → 223
      B41; Band 4.1 homologues
      cd13185
      Location:216 → 324
      FERM_C_FRMD1_FRMD6; FERM domain C-lobe of FERM domain containing 1 and 6 proteins
      pfam00373
      Location:109 → 223
      FERM_M; FERM central domain
      pfam09379
      Location:13 → 75
      FERM_N; FERM N-terminal domain
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools