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    zgc:153675 zgc:153675 [ Danio rerio (zebrafish) ]

    Gene ID: 768179, updated on 28-Oct-2024

    Summary

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    Official Symbol
    zgc:153675provided by ZNC
    Official Full Name
    zgc:153675provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-061013-567
    See related
    Ensembl:ENSDARG00000071555 AllianceGenome:ZFIN:ZDB-GENE-061013-567
    Gene type
    protein coding
    RefSeq status
    PREDICTED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Orthologs
    all
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    Genomic context

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    See zgc:153675 in Genome Data Viewer
    Location:
    chromosome: 22
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 22 NC_007133.7 (812848..817516, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 22 NC_007133.6 (795677..800586, complement)

    Chromosome 22 - NC_007133.7Genomic Context describing neighboring genes Neighboring gene retinoblastoma binding protein 5 Neighboring gene cryptochrome circadian regulator 3b Neighboring gene cryptochrome circadian regulator 4 Neighboring gene DENN/MADD domain containing 2Db Neighboring gene DNA-damage regulated autophagy modulator 2b

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein LOC768179

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001077322.1 → NP_001070790.1  uncharacterized protein LOC768179

      See identical proteins and their annotated locations for NP_001070790.1

      Status: PREDICTED

      Source sequence(s)
      BC124717
      UniProtKB/TrEMBL
      Q08BH8
      Related
      ENSDART00000122722.3
      Conserved Domains (1) summary
      pfam15475
      Location:34 → 124
      UPF0444; Transmembrane protein C12orf23, UPF0444

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007133.7 Reference GRCz11 Primary Assembly

      Range
      812848..817516 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005168276.5 → XP_005168333.1  uncharacterized protein LOC768179 isoform X1

      UniProtKB/TrEMBL
      A0A8M2BFL5
      Related
      ENSDARP00000105913.2, ENSDART00000123487.3
      Conserved Domains (1) summary
      pfam15475
      Location:82 → 172
      UPF0444; Transmembrane protein C12orf23, UPF0444
    Nucleotide Protein Strain
    Heading Accession and Version

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