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    irgf4 immunity-related GTPase family, f4 [ Danio rerio (zebrafish) ]

    Gene ID: 767672, updated on 9-Dec-2024

    Summary

    Official Symbol
    irgf4provided by ZNC
    Official Full Name
    immunity-related GTPase family, f4provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-060929-404
    See related
    AllianceGenome:ZFIN:ZDB-GENE-060929-404
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    zgc:152960
    Summary
    Predicted to enable GTP binding activity and zinc ion binding activity. [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    NEW
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    Genomic context

    See irgf4 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 3 NC_007114.7 (938329..943971)
    105 previous assembly GRCz10 (GCF_000002035.5) 3 NC_007114.6 (1169685..1175322)

    Chromosome 3 - NC_007114.7Genomic Context describing neighboring genes Neighboring gene GTPase IMAP family member 9-like Neighboring gene C-type lectin domain family 4 member E Neighboring gene C-type lectin-like Neighboring gene zgc:172051 Neighboring gene GTPase IMAP family member 4-like

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    General protein information

    Preferred Names
    E3 ubiquitin-protein ligase TRIM35; immunity-related GTPase family, f4

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007114.7 Reference GRCz11 Primary Assembly

      Range
      938329..943971
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005171533.5XP_005171590.1  E3 ubiquitin-protein ligase TRIM35

      UniProtKB/TrEMBL
      A0A8M2BIV5
      Conserved Domains (4) summary
      cd00021
      Location:90127
      BBOX; B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction.
      cd00162
      Location:1960
      RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...
      pfam13863
      Location:145246
      DUF4200; Domain of unknown function (DUF4200)
      cl21455
      Location:291502
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001076611.1: Suppressed sequence

      Description
      NM_001076611.1: This RefSeq was removed because currently there is insufficient support for the transcript.