lsm12a LSM12 homolog a [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: lsm12aprovided by ZNC
Official Full Name: LSM12 homolog aprovided by ZNC
Primary source: ZFIN:ZDB-GENE-040516-12
See related: Ensembl:ENSDARG00000028848 AllianceGenome:ZFIN:ZDB-GENE-040516-12
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: lsm12b; zgc:85812
Summary: Predicted to enable RNA binding activity. Orthologous to human LSM12 (LSM12 homolog). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs: all
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Genomic context

Location:: chromosome: 3

Exon count:: 5

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	3	NC_007114.7 (22984126..22994433)
105	previous assembly	GRCz10 (GCF_000002035.5)	3	NC_007114.6 (22853578..22863885)

Chromosome 3 - NC_007114.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables RNA binding	IEA Inferred from Electronic Annotation more info
enables molecular_function	ND No biological Data available more info

Process	Evidence Code	Pubs
involved_in biological_process	ND No biological Data available more info

Component	Evidence Code	Pubs
is_active_in cellular_component	ND No biological Data available more info

General protein information

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Preferred Names: protein LSM12 homolog B

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_214817.1 → NP_999982.1 protein LSM12 homolog B

See identical proteins and their annotated locations for NP_999982.1

Status: PROVISIONAL

Source sequence(s)

BC070015

UniProtKB/Swiss-Prot

Q6NSN1

UniProtKB/TrEMBL

A7YYF3

Related

ENSDARP00000043189.5, ENSDART00000043190.6

Conserved Domains (2) summary

cd01735
Location:8 → 68

LSm12_N; Like-Sm protein 12, N-terminal domain

smart00995
Location:79 → 166

AD; Anticodon-binding domain