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    mrpl42 mitochondrial ribosomal protein L42 [ Danio rerio (zebrafish) ]

    Gene ID: 568235, updated on 9-Dec-2024

    Summary

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    Official Symbol
    mrpl42provided by ZNC
    Official Full Name
    mitochondrial ribosomal protein L42provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-101014-1
    See related
    Ensembl:ENSDARG00000079391 AllianceGenome:ZFIN:ZDB-GENE-101014-1
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Summary
    Predicted to be located in mitochondrion and ribosome. Predicted to be part of ribonucleoprotein complex. Orthologous to human MRPL42 (mitochondrial ribosomal protein L42). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See mrpl42 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 4 NC_007115.7 (1821643..1824844, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 4 NC_007115.6 (1972330..1975531, complement)

    Chromosome 4 - NC_007115.7Genomic Context describing neighboring genes Neighboring gene nudix (nucleoside diphosphate linked moiety X)-type motif 4b Neighboring gene ubiquitin-conjugating enzyme E2Nb Neighboring gene uncharacterized LOC137491496 Neighboring gene PWP1 homolog, endonuclein Neighboring gene anoctamin 6

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Reproductive toxicity of β-diketone antibiotic mixtures to zebrafish (Danio rerio). Wang X, et al. Ecotoxicol Environ Saf, 2017 Jul. PMID 28342328
    2. Zebrafish Ubc13 is required for Lys63-linked polyubiquitination and DNA damage tolerance. Li J, et al. Mol Cell Biochem, 2010 Oct. PMID 20556485
    3. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by ZFIN

    Component Evidence Code Pubs
    part_of mitochondrial large ribosomal subunit IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in mitochondrion IEA
    Inferred from Electronic Annotation
    more info
    		  
    part_of ribonucleoprotein complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in ribosome IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    large ribosomal subunit protein mL42

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001327819.1 → NP_001314748.1  large ribosomal subunit protein mL42

      Status: VALIDATED

      Source sequence(s)
      CU571163, EH484476
      UniProtKB/TrEMBL
      A0A8M1P3T1, F1Q839
      Related
      ENSDARP00000103369.3, ENSDART00000111858.4
      Conserved Domains (1) summary
      pfam10210
      Location:48 → 144
      MRP-S32; Mitochondrial 28S ribosomal protein S32

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007115.7 Reference GRCz11 Primary Assembly

      Range
      1821643..1824844 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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