zgc:66388 zgc:66388 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: zgc:66388provided by ZNC
Official Full Name: zgc:66388provided by ZNC
Primary source: ZFIN:ZDB-GENE-040426-1629
See related: AllianceGenome:ZFIN:ZDB-GENE-040426-1629
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: UBL5
Summary: Predicted to enable protein tag activity. Predicted to be involved in mRNA splicing, via spliceosome and protein modification process. Predicted to be active in cytoplasm and nucleus. Orthologous to human UBL5 (ubiquitin like 5). [provided by Alliance of Genome Resources, Dec 2024]
Annotation information: Annotation category: partial on reference assembly
Orthologs: human mouse all
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Genomic context

Location:: chromosome: Un

Exon count:: 2

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	Unplaced Scaffold	NW_003336837.1 (34..404)
105	previous assembly	GRCz10 (GCF_000002035.5)	Unplaced Scaffold	NW_003336837.1 (34..404)

NW_003336837.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables protein tag activity	IBA Inferred from Biological aspect of Ancestor more info

Process	Evidence Code	Pubs
involved_in mRNA splicing, via spliceosome	IBA Inferred from Biological aspect of Ancestor more info
involved_in protein modification process	IBA Inferred from Biological aspect of Ancestor more info
acts_upstream_of_or_within protein modification process	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
is_active_in cytoplasm	IBA Inferred from Biological aspect of Ancestor more info
located_in cytoplasm	IEA Inferred from Electronic Annotation more info
is_active_in nucleus	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: ubiquitin-like protein 5

Names: ubiquitin-like 5

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_201141.1 → NP_957435.1 ubiquitin-like protein 5

See identical proteins and their annotated locations for NP_957435.1

Status: PROVISIONAL

Source sequence(s)

BC055630

UniProtKB/Swiss-Prot

Q7SXF2

Conserved Domains (1) summary

cd01791
Location:1 → 73

Ubl5; UBL5 ubiquitin-like modifier