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    si:dkey-30c15.13 si:dkey-30c15.13 [ Danio rerio (zebrafish) ]

    Gene ID: 558731, updated on 9-Dec-2024

    Summary

    Official Symbol
    si:dkey-30c15.13provided by ZNC
    Official Full Name
    si:dkey-30c15.13provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-060503-73
    See related
    Ensembl:ENSDARG00000114258 AllianceGenome:ZFIN:ZDB-GENE-060503-73
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Summary
    Predicted to be located in membrane. Orthologous to human TMEM253 (transmembrane protein 253). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
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    Genomic context

    See si:dkey-30c15.13 in Genome Data Viewer
    Location:
    chromosome: 18
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 18 NC_007129.7 (7395164..7400086, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 18 NC_007129.6 (7436229..7441151, complement)

    Chromosome 18 - NC_007129.7Genomic Context describing neighboring genes Neighboring gene Bardet-Biedl syndrome 10 Neighboring gene synaptotagmin Ib Neighboring gene si:dkey-30c15.12 Neighboring gene anillin, actin binding protein 2 Neighboring gene putative pyruvate dehydrogenase phosphatase isoenzyme 2

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001044872.2NP_001038337.1  transmembrane protein 253

      See identical proteins and their annotated locations for NP_001038337.1

      Status: PROVISIONAL

      Source sequence(s)
      BC134086
      UniProtKB/TrEMBL
      A0A2R8Q702, Q1LX35
      Related
      ENSDARP00000092024.3, ENSDART00000101250.4
      Conserved Domains (1) summary
      pfam04103
      Location:61133
      CD20; CD20-like family

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007129.7 Reference GRCz11 Primary Assembly

      Range
      7395164..7400086 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018395003.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      39102..44019 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)