znf1161 zinc finger protein 1161 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: znf1161provided by ZNC
Official Full Name: zinc finger protein 1161provided by ZNC
Primary source: ZFIN:ZDB-GENE-050420-11
See related: Ensembl:ENSDARG00000074125 AllianceGenome:ZFIN:ZDB-GENE-050420-11
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: si:dkey-4c15.5
Summary: Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human ZNF222 (zinc finger protein 222); ZNF627 (zinc finger protein 627); and ZNF670 (zinc finger protein 670). [provided by Alliance of Genome Resources, Dec 2024]
NEW: Try the new Gene table
Try the new Transcript table

Genomic context

Location:: chromosome: 22

Exon count:: 4

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	22	NC_007133.7 (2228926..2238059)
105	previous assembly	GRCz10 (GCF_000002035.5)	22	NC_007133.6 (2212665..2218864)

Chromosome 22 - NC_007133.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to reference sequence details

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help

See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

Go to the top of the page Help

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

General gene information

Go to the top of the page Help

Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific	IBA Inferred from Biological aspect of Ancestor more info
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding	IBA Inferred from Biological aspect of Ancestor more info
enables metal ion binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in regulation of transcription by RNA polymerase II	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
is_active_in nucleus	IBA Inferred from Biological aspect of Ancestor more info

General protein information

Go to the top of the page Help

Preferred Names: zinc finger protein 1161

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001245092.1 → NP_001232021.1 zinc finger protein 1161

See identical proteins and their annotated locations for NP_001232021.1

Status: PROVISIONAL

Source sequence(s)

BC153394

UniProtKB/TrEMBL

A8DZC6, A8E4Z9

Related

ENSDARP00000119423.1, ENSDART00000133475.2

Conserved Domains (3) summary

COG5048
Location:173 → 332

COG5048; FOG: Zn-finger [General function prediction only]

sd00017
Location:176 → 196

ZF_C2H2; C2H2 Zn finger [structural motif]

pfam13465
Location:132 → 155

zf-H2C2_2; Zinc-finger double domain