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    zgc:113293 zgc:113293 [ Danio rerio (zebrafish) ]

    Gene ID: 550593, updated on 9-Dec-2024

    Summary

    Official Symbol
    zgc:113293provided by ZNC
    Official Full Name
    zgc:113293provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-050417-453
    See related
    Ensembl:ENSDARG00000038271 AllianceGenome:ZFIN:ZDB-GENE-050417-453
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Summary
    Predicted to be located in plasma membrane. [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
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    Genomic context

    See zgc:113293 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 2 NC_007113.7 (205763..211064)
    105 previous assembly GRCz10 (GCF_000002035.5) 2 NC_007113.6 (216852..222153)

    Chromosome 2 - NC_007113.7Genomic Context describing neighboring genes Neighboring gene zinc finger protein OZF Neighboring gene zinc finger protein 431 Neighboring gene DEAH (Asp-Glu-Ala-His) box helicase 30 Neighboring gene zinc finger protein 431

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    General gene information

    Gene Ontology Provided by ZFIN

    Component Evidence Code Pubs
    located_in membrane  
    located_in plasma membrane  

    General protein information

    Preferred Names
    uncharacterized protein LOC550593

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001017894.2 → NP_001017894.2  uncharacterized protein LOC550593 precursor

      Status: VALIDATED

      Source sequence(s)
      EH549464, EH577932
      UniProtKB/TrEMBL
      A0A0R4IWF6, A0A8M1N5G4
      Related
      ENSDARP00000139255.1, ENSDART00000160164.2
      Conserved Domains (2) summary
      smart00410
      Location:23 → 126
      IG_like; Immunoglobulin like
      cl11960
      Location:30 → 127
      Ig; Immunoglobulin domain

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007113.7 Reference GRCz11 Primary Assembly

      Range
      205763..211064
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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