cimap1b ciliary microtubule associated protein 1B [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: cimap1bprovided by ZNC
Official Full Name: ciliary microtubule associated protein 1Bprovided by ZNC
Primary source: ZFIN:ZDB-GENE-030131-7464
See related: Ensembl:ENSDARG00000042396 AllianceGenome:ZFIN:ZDB-GENE-030131-7464
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: odf3b; odf3l; fj19d04; trim35-30; zgc:63985; wu:fj19d04; si:dkeyp-1h4.4
Summary: Predicted to be located in motile cilium. Predicted to be active in cytoskeleton. Is expressed in male organism; peripheral olfactory organ; and pronephros. Orthologous to several human genes including CIMAP1B (ciliary microtubule associated protein 1B). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 18

Exon count:: 7

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	18	NC_007129.7 (7611508..7619050)
105	previous assembly	GRCz10 (GCF_000002035.5)	18	NC_007129.6 (7652540..7660185)

Chromosome 18 - NC_007129.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

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General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables molecular_function	ND No biological Data available more info

Process	Evidence Code	Pubs
involved_in biological_process	ND No biological Data available more info

Component	Evidence Code	Pubs
located_in cell projection	IEA Inferred from Electronic Annotation more info
located_in cilium	IEA Inferred from Electronic Annotation more info
is_active_in cytoskeleton	IBA Inferred from Biological aspect of Ancestor more info
located_in motile cilium	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: ciliary microtubule associated protein 1B

Names: outer dense fiber of sperm tails 3B; outer dense fiber of sperm tails protein 3; outer dense fiber of sperm tails protein 3-B; outer dense fiber protein 3; outer dense fiber protein 3-B; shippo1; shpp; shpp1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.