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    golm2 golgi membrane protein 2 [ Danio rerio (zebrafish) ]

    Gene ID: 555654, updated on 9-Dec-2024

    Summary

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    Official Symbol
    golm2provided by ZNC
    Official Full Name
    golgi membrane protein 2provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-091130-1
    See related
    Ensembl:ENSDARG00000074490 AllianceGenome:ZFIN:ZDB-GENE-091130-1
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    casc4
    Summary
    Predicted to be located in membrane. Orthologous to human GOLM2 (golgi membrane protein 2). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See golm2 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 7 NC_007118.7 (31338171..31367917)
    105 previous assembly GRCz10 (GCF_000002035.5) 7 NC_007118.6 (31066969..31096771)

    Chromosome 7 - NC_007118.7Genomic Context describing neighboring genes Neighboring gene tight junction protein 1a Neighboring gene family with sequence similarity 189 member A1 Neighboring gene uncharacterized LOC103911386 Neighboring gene CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2b Neighboring gene stereocilin 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article
    2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by ZFIN

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    protein CASC4; protein GOLM2
    Names
    cancer susceptibility candidate 4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007118.7 Reference GRCz11 Primary Assembly

      Range
      31338171..31367917
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005168941.5 → XP_005168998.1  protein GOLM2 isoform X1

      UniProtKB/TrEMBL
      A0A8M2BG87, E7FBP9
      Related
      ENSDARP00000101657.2, ENSDART00000114148.5
      Conserved Domains (1) summary
      cl23720
      Location:94 → 196
      RILP-like; Rab interacting lysosomal protein-like 1 and 2 (Rilpl1 and Rilpl2)

    2. XM_678225.9 → XP_683317.2  protein GOLM2 isoform X2

      UniProtKB/TrEMBL
      A0A1D5NSL0, A0A8N7UUL7
      Related
      ENSDARP00000142827.1, ENSDART00000173477.2
      Conserved Domains (1) summary
      cl23720
      Location:94 → 196
      RILP-like; Rab interacting lysosomal protein-like 1 and 2 (Rilpl1 and Rilpl2)
    Nucleotide Protein Strain
    Heading Accession and Version

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