U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    si:ch73-111k22.3 si:ch73-111k22.3 [ Danio rerio (zebrafish) ]

    Gene ID: 100003104, updated on 9-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    si:ch73-111k22.3provided by ZNC
    Official Full Name
    si:ch73-111k22.3provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-141212-371
    See related
    Ensembl:ENSDARG00000103492 AllianceGenome:ZFIN:ZDB-GENE-141212-371
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Summary
    Predicted to be involved in endosome organization; receptor recycling; and retrograde transport, endosome to Golgi. Predicted to be active in early endosome; recycling endosome; and trans-Golgi network. [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See si:ch73-111k22.3 in Genome Data Viewer
    Location:
    chromosome: 20
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 20 NC_007131.7 (3913417..3915770, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 20 NC_007131.6 (4116131..4118483)

    Chromosome 20 - NC_007131.7Genomic Context describing neighboring genes Neighboring gene exostosin-1 Neighboring gene uncharacterized LOC137488608 Neighboring gene cnksr family member 3 Neighboring gene si:ch73-111k22.2 Neighboring gene C-type lectin domain containing 11A

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    General protein information

    Go to the top of the page Help
    Preferred Names
    pleckstrin homology-like domain-containing protein
    Names
    differentially expressed in FDCP 6 homolog

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001386283.1 → NP_001373212.1  pleckstrin homology-like domain-containing protein

      Status: VALIDATED

      Source sequence(s)
      CU929133
      UniProtKB/TrEMBL
      A0A8M1PV46
      Related
      ENSDARP00000135737.1, ENSDART00000159322.2
      Conserved Domains (1) summary
      cl17171
      Location:21 → 105
      PH-like; Pleckstrin homology-like domain

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007131.7 Reference GRCz11 Primary Assembly

      Range
      3913417..3915770 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials