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    ccdc167 coiled-coil domain containing 167 [ Danio rerio (zebrafish) ]

    Gene ID: 556080, updated on 9-Dec-2024

    Summary

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    Official Symbol
    ccdc167provided by ZNC
    Official Full Name
    coiled-coil domain containing 167provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-041210-79
    See related
    Ensembl:ENSDARG00000045850 AllianceGenome:ZFIN:ZDB-GENE-041210-79
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    si:ch211-214j24.7
    Summary
    Predicted to be located in membrane. Orthologous to human CCDC167 (coiled-coil domain containing 167). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See ccdc167 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 4 NC_007115.7 (5255040..5256861)
    105 previous assembly GRCz10 (GCF_000002035.5) 4 NC_007115.6 (5246470..5248291)

    Chromosome 4 - NC_007115.7Genomic Context describing neighboring genes Neighboring gene ATPase H+ transporting V1 subunit E1b Neighboring gene si:ch211-214j24.14 Neighboring gene synaptosome associated protein 91b Neighboring gene uncharacterized LOC137491504 Neighboring gene clathrin coat assembly protein AP180 Neighboring gene clathrin coat assembly protein AP180-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by ZFIN

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    coiled-coil domain-containing protein 167
    Names
    transmembrane and coiled-coil domain-containing protein C6orf129 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001328596.1 → NP_001315525.1  coiled-coil domain-containing protein 167

      Status: VALIDATED

      Source sequence(s)
      BX323558, EH467982, EH543436
      UniProtKB/Swiss-Prot
      A3KNS5, B0S617, Q5RHZ2
      Related
      ENSDARP00000118096.1, ENSDART00000137966.3
      Conserved Domains (1) summary
      pfam15188
      Location:13 → 93
      CCDC-167; Coiled-coil domain-containing protein 167

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007115.7 Reference GRCz11 Primary Assembly

      Range
      5255040..5256861
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001025484.2: Suppressed sequence

      Description
      NM_001025484.2: This RefSeq was removed because currently there is insufficient support for the transcript.
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5RHZ2.1 GenPept UniProtKB/Swiss-Prot:Q5RHZ2

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.