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    inpp4aa inositol polyphosphate-4-phosphatase type I Aa [ Danio rerio (zebrafish) ]

    Gene ID: 664741, updated on 9-Dec-2024

    Summary

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    Official Symbol
    inpp4aaprovided by ZNC
    Official Full Name
    inositol polyphosphate-4-phosphatase type I Aaprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-060312-5
    See related
    Ensembl:ENSDARG00000063352 AllianceGenome:ZFIN:ZDB-GENE-060312-5
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    inpp4a; zgc:136977
    Summary
    Predicted to enable phosphatidylinositol-3,4-bisphosphate 4-phosphatase activity. Predicted to be active in cytoplasm. Orthologous to human INPP4A (inositol polyphosphate-4-phosphatase type I A). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See inpp4aa in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    24
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 9 NC_007120.7 (6998082..7068258)
    105 previous assembly GRCz10 (GCF_000002035.5) 9 NC_007120.6 (7019691..7089867)

    Chromosome 9 - NC_007120.7Genomic Context describing neighboring genes Neighboring gene major facilitator superfamily domain containing 9 Neighboring gene solute carrier family 9 member 2 Neighboring gene si:dkey-4e7.3 Neighboring gene cytochrome C oxidase assembly factor 5

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Recent assembly of an imprinted domain from non-imprinted components. Rapkins RW, et al. PLoS Genet, 2006 Oct. PMID 17069464, Free PMC Article
    2. Hematopoietic gene expression profile in zebrafish kidney marrow. Song HD, et al. Proc Natl Acad Sci U S A, 2004 Nov 16. PMID 15520368, Free PMC Article
    3. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article
    4. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC136977

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables phosphatidylinositol-3,4-bisphosphate 4-phosphatase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables phosphatidylinositol-3,4-bisphosphate 4-phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    inositol polyphosphate-4-phosphatase type I A
    Names
    inositol polyphosphate-4-phosphatase, type I
    inositol polyphosphate-4-phosphatase, type Ia
    NP_001035062.2
    XP_017213206.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001039973.2 → NP_001035062.2  inositol polyphosphate-4-phosphatase type I A

      Status: VALIDATED

      Source sequence(s)
      BX629348
      UniProtKB/TrEMBL
      A0A8M1N8H4, B0S737, E7F944
      Related
      ENSDARP00000086912.5, ENSDART00000092480.7
      Conserved Domains (1) summary
      cd04048
      Location:42 → 155
      C2A_Copine; C2 domain first repeat in Copine

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007120.7 Reference GRCz11 Primary Assembly

      Range
      6998082..7068258
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017357717.3 → XP_017213206.1  inositol polyphosphate-4-phosphatase type I A isoform X1

      UniProtKB/TrEMBL
      A0A2R8QEX9, A0A8M6Z826
      Related
      ENSDARP00000150478.1, ENSDART00000190491.1
    Nucleotide Protein
    Heading Accession and Version

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