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    si:rp71-19m20.1 si:rp71-19m20.1 [ Danio rerio (zebrafish) ]

    Gene ID: 570641, updated on 9-Dec-2024

    Summary

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    Official Symbol
    si:rp71-19m20.1provided by ZNC
    Official Full Name
    si:rp71-19m20.1provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-3509
    See related
    Ensembl:ENSDARG00000089828 AllianceGenome:ZFIN:ZDB-GENE-030131-3509
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fc43b12; wu:fc43b12
    Summary
    Orthologous to several human genes including C10orf88 (chromosome 10 open reading frame 88). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See si:rp71-19m20.1 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 12 NC_007123.7 (11352654..11370935)
    105 previous assembly GRCz10 (GCF_000002035.5) 12 NC_007123.6 (11314341..11332988)

    Chromosome 12 - NC_007123.7Genomic Context describing neighboring genes Neighboring gene guided entry of tail-anchored proteins factor 4 Neighboring gene ADAM metallopeptidase domain 9b Neighboring gene HtrA serine peptidase 1b Neighboring gene uncharacterized LOC137490434 Neighboring gene pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1b

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    ATPase PAAT

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007123.7 Reference GRCz11 Primary Assembly

      Range
      11352654..11370935
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_694146.9 → XP_699238.2  ATPase PAAT

      UniProtKB/TrEMBL
      A0A8M6Z9D3, A0A8N7T8L4, E7FEM4
      Related
      ENSDARP00000112326.2, ENSDART00000129495.4
      Conserved Domains (1) summary
      pfam14958
      Location:48 → 183
      DUF4506; Domain of unknown function (DUF4506)
    Nucleotide Protein Strain
    Heading Accession and Version

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