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    gpatch1 G patch domain containing 1 [ Danio rerio (zebrafish) ]

    Gene ID: 448925, updated on 9-Dec-2024

    Summary

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    Official Symbol
    gpatch1provided by ZNC
    Official Full Name
    G patch domain containing 1provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-040914-65
    See related
    Ensembl:ENSDARG00000033418 AllianceGenome:ZFIN:ZDB-GENE-040914-65
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    im:7135982; wu:fc11h11; wu:fj99h08
    Summary
    Predicted to enable RNA binding activity. Predicted to act upstream of or within mRNA processing. Predicted to be active in nucleus. Orthologous to human GPATCH1 (G-patch domain containing 1). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See gpatch1 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 7 NC_007118.7 (38265363..38277240)
    105 previous assembly GRCz10 (GCF_000002035.5) 7 NC_007118.6 (37994105..38005982)

    Chromosome 7 - NC_007118.7Genomic Context describing neighboring genes Neighboring gene si:dkey-78a14.4 Neighboring gene CTD nuclear envelope phosphatase 1 regulatory subunit 1 Neighboring gene transfer RNA threonine (anticodon AGU) Neighboring gene low density lipoprotein receptor-related protein 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. The zebrafish cationic amino acid transporter/glycoprotein-associated family: sequence and spatiotemporal distribution during development of the transport system b(0,+) (slc3a1/slc7a9). Ellingsen S, et al. Fish Physiol Biochem, 2021 Oct. PMID 34338990, Free PMC Article
    2. A Toolbox for Efficient Proximity-Dependent Biotinylation in Zebrafish Embryos. Rosenthal SM, et al. Mol Cell Proteomics, 2021. PMID 34332124, Free PMC Article
    3. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables RNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within mRNA processing IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    G patch domain-containing protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001204123.1 → NP_001191052.1  G patch domain-containing protein 1

      Status: VALIDATED

      Source sequence(s)
      BC125820, CT607880
      UniProtKB/TrEMBL
      A0A8M1P3M2, A0JMC1, G1K2G6
      Related
      ENSDARP00000014631.10, ENSDART00000009386.11
      Conserved Domains (2) summary
      pfam01585
      Location:153 → 187
      G-patch; G-patch domain
      pfam07713
      Location:30 → 115
      DUF1604; Protein of unknown function (DUF1604)

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007118.7 Reference GRCz11 Primary Assembly

      Range
      38265363..38277240
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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