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    rin3 Ras and Rab interactor 3 [ Danio rerio (zebrafish) ]

    Gene ID: 799244, updated on 9-Dec-2024

    Summary

    Official Symbol
    rin3provided by ZNC
    Official Full Name
    Ras and Rab interactor 3provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-8871
    See related
    Ensembl:ENSDARG00000077618 AllianceGenome:ZFIN:ZDB-GENE-030131-8871
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fk30a05; wu:fk30a05; si:dkey-246c17.2
    Summary
    Predicted to enable guanyl-nucleotide exchange factor activity and small GTPase binding activity. Predicted to act upstream of or within signal transduction and vesicle-mediated transport. Predicted to be active in cytosol and endocytic vesicle. Orthologous to human RIN3 (Ras and Rab interactor 3). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
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    Genomic context

    See rin3 in Genome Data Viewer
    Location:
    chromosome: 17
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 17 NC_007128.7 (33454020..33484911)
    105 previous assembly GRCz10 (GCF_000002035.5) 17 NC_007128.6 (33501166..33532402)

    Chromosome 17 - NC_007128.7Genomic Context describing neighboring genes Neighboring gene synaptosome associated protein 23.2 Neighboring gene uncharacterized LOC137488121 Neighboring gene transmembrane protein 121Aa Neighboring gene parathyroid hormone 2

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    General gene information

    Markers

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables GTPase activator activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables guanyl-nucleotide exchange factor activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables guanyl-nucleotide exchange factor activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables small GTPase binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Process Evidence Code Pubs
    acts_upstream_of_or_within signal transduction IEA
    Inferred from Electronic Annotation
    more info
     
    acts_upstream_of_or_within vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    is_active_in cytosol IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    is_active_in endocytic vesicle IBA
    Inferred from Biological aspect of Ancestor
    more info
     

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007128.7 Reference GRCz11 Primary Assembly

      Range
      33454020..33484911
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001339586.9XP_001339622.2  ras and Rab interactor 3

      UniProtKB/TrEMBL
      A0A8M1PZC2, E7FC22
      Related
      ENSDARP00000127920.1, ENSDART00000156894.2
      Conserved Domains (3) summary
      cd10395
      Location:149249
      SH2_RIN3; Src homology 2 (SH2) domain found in Ras and Rab interactor 3 (RIN3)-like proteins
      pfam02204
      Location:803905
      VPS9; Vacuolar sorting protein 9 (VPS9) domain
      cl00155
      Location:9421024
      UBQ; Ubiquitin-like proteins