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    scl-19 SCP domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 191308, updated on 9-Dec-2024

    Summary

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    Official Symbol
    scl-19
    Official Full Name
    SCP domain-containing protein
    Primary source
    WormBase:WBGene00013971
    Locus tag
    CELE_ZK384.1
    See related
    AllianceGenome:WB:WBGene00013971
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be active in extracellular space. Orthologous to several human genes including GLIPR1 (GLI pathogenesis related 1); R3HDML (R3H domain containing like); and CRISPLD1 (cysteine rich secretory protein LCCL domain containing 1). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See scl-19 in Genome Data Viewer
    Location:
    chromosome: V
    Exon count:
    4
    Sequence:
    Chromosome: V; NC_003283.11 (18731991..18732772)

    Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene Peptidase A1 domain-containing protein Neighboring gene Peptidase A1 domain-containing protein Neighboring gene SCP domain-containing protein Neighboring gene ncRNA Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003283.11

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. DAF-16/FOXO targets genes that regulate tumor growth in Caenorhabditis elegans. Pinkston-Gosse J, et al. Nat Genet, 2007 Nov. PMID 17934462
    2. OrthoList: a compendium of C. elegans genes with human orthologs. Shaye DD, et al. PLoS One, 2011. PMID 21647448, Free PMC Article
    3. OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes. Kim W, et al. Genetics, 2018 Oct. PMID 30120140, Free PMC Article
    4. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Component Evidence Code Pubs
    is_active_in extracellular space IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    SCP domain-containing protein
    NP_507654.2
    • Partially confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003283.11 Reference assembly

      Range
      18731991..18732772
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_075253.3 → NP_507654.2  SCP domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_507654.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      O62507
      Conserved Domains (1) summary
      smart00198
      Location:21 → 167
      SCP; SCP / Tpx-1 / Ag5 / PR-1 / Sc7 family of extracellular domains
    Nucleotide Protein
    Heading Accession and Version

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