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    madf-6 MADF domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 171680, updated on 18-Sep-2024

    Summary

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    Official Symbol
    madf-6
    Official Full Name
    MADF domain-containing protein
    Primary source
    WormBase:WBGene00016930
    Locus tag
    CELE_C54G6.1
    See related
    AllianceGenome:WB:WBGene00016930
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
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    Genomic context

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    See madf-6 in Genome Data Viewer
    Location:
    chromosome: I
    Exon count:
    5
    Sequence:
    Chromosome: I; NC_003279.8 (1011371..1014455, complement)

    Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene Homeobox-containing protein 1 Neighboring gene L-serine-phosphatidylethanolamine phosphatidyltransferase Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene C-CAP/cofactor C-like domain-containing protein;TBCC domain-containing protein 1 Neighboring gene EB domain-containing protein Neighboring gene Saposin B-type domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003279.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. CCAR-1 works together with the U2AF large subunit UAF-1 to regulate alternative splicing. Lugano DI, et al. RNA Biol, 2024 Jan. PMID 38126797, Free PMC Article
    2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    MADF domain-containing protein
    NP_490806.1
    • Confirmed by transcript evidence
    NP_490807.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003279.8 Reference assembly

      Range
      1011371..1014455 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_058405.6 → NP_490806.1  MADF domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_490806.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      H2KZF9
      Conserved Domains (1) summary
      smart00595
      Location:102 → 187
      MADF; subfamily of SANT domain

    2. NM_058406.5 → NP_490807.1  MADF domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_490807.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q965K4
      Conserved Domains (1) summary
      smart00595
      Location:95 → 180
      MADF; subfamily of SANT domain
    Nucleotide Protein
    Heading Accession and Version

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