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    • Showing Current items.

    ZK1248.15 WW domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 173991, updated on 9-Dec-2024

    Summary

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    Official Symbol
    ZK1248.15
    Official Full Name
    WW domain-containing protein
    Primary source
    WormBase:WBGene00022883
    Locus tag
    CELE_ZK1248.15
    See related
    AllianceGenome:WB:WBGene00022883
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be active in nucleus. Orthologous to human SWT1 (SWT1 RNA endoribonuclease homolog). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See ZK1248.15 in Genome Data Viewer
    Location:
    chromosome: II
    Exon count:
    6
    Sequence:
    Chromosome: II; NC_003280.10 (5836781..5838553, complement)

    Chromosome II - NC_003280.10Genomic Context describing neighboring genes Neighboring gene Dynein heavy chain 7, axonemal Neighboring gene Nematode cuticle collagen N-terminal domain-containing protein Neighboring gene Transmembrane GTPase fzo-1 Neighboring gene Protein LZIC Neighboring gene Galectin

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003280.10

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A map of the interactome network of the metazoan C. elegans. Li S, et al. Science, 2004 Jan 23. PMID 14704431, Free PMC Article
    2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Component Evidence Code Pubs
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    WW domain-containing protein
    NP_495162.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003280.10 Reference assembly

      Range
      5836781..5838553 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_062761.9 → NP_495162.1  WW domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_495162.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q23425
      Conserved Domains (2) summary
      smart00456
      Location:21 → 49
      WW; Domain with 2 conserved Trp (W) residues
      cd09880
      Location:160 → 304
      PIN_Smg5-6-like; VapC-like PIN domain of nonsense-mediated decay (NMD) factors, Smg5 and Smg6, and related proteins
    Nucleotide Protein
    Heading Accession and Version

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