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    mip-2 HTH OST-type domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 179856, updated on 9-Dec-2024

    Summary

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    Official Symbol
    mip-2
    Official Full Name
    HTH OST-type domain-containing protein
    Primary source
    WormBase:WBGene00010281
    Locus tag
    CELE_F58G11.3
    See related
    AllianceGenome:WB:WBGene00010281
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Is expressed in P0; Psub1; Psub2; Psub3; and spermatocyte. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See mip-2 in Genome Data Viewer
    Location:
    chromosome: V
    Exon count:
    8
    Sequence:
    Chromosome: V; NC_003283.11 (13669353..13671958, complement)

    Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene Mitochondrial proton/calcium exchanger protein Neighboring gene DEAD-box ATP-dependent RNA helicase rde-12 Neighboring gene MFS domain-containing protein Neighboring gene CID domain-containing protein Neighboring gene Vacuolar fusion protein CCZ1 homolog Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003283.11

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. C. elegans germ granules sculpt both germline and somatic RNAome. Price IF, et al. Nat Commun, 2023 Sep 25. PMID 37749091, Free PMC Article
    2. GLH/VASA helicases promote germ granule formation to ensure the fidelity of piRNA-mediated transcriptome surveillance. Chen W, et al. Nat Commun, 2022 Sep 9. PMID 36085149, Free PMC Article
    3. Empirically controlled mapping of the Caenorhabditis elegans protein-protein interactome network. Simonis N, et al. Nat Methods, 2009 Jan. PMID 19123269, Free PMC Article
    4. Novel LOTUS-domain proteins are organizational hubs that recruit C. elegans Vasa to germ granules. Cipriani PG, et al. Elife, 2021 Jul 5. PMID 34223818, Free PMC Article
    5. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    HTH OST-type domain-containing protein
    NP_001041135.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003283.11 Reference assembly

      Range
      13669353..13671958 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001047670.5 → NP_001041135.1  HTH OST-type domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001041135.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      P90898
      Conserved Domains (1) summary
      cl14879
      Location:12 → 99
      LabA_like_C; C-terminal domain of LabA_like proteins

    RNA

    1. NR_003171.1 RNA Sequence

      Status: REVIEWED

    Nucleotide Protein
    Heading Accession and Version

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