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    • Showing Current items.

    ntl-9 CCR4-NOT transcription complex subunit 9 [ Caenorhabditis elegans ]

    Gene ID: 175669, updated on 9-Dec-2024

    Summary

    Official Symbol
    ntl-9
    Official Full Name
    CCR4-NOT transcription complex subunit 9
    Primary source
    WormBase:WBGene00016139
    Locus tag
    CELE_C26E6.3
    See related
    AllianceGenome:WB:WBGene00016139
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Involved in hemidesmosome assembly. Predicted to be part of CCR4-NOT core complex. Predicted to be active in P-body. Is expressed in gonad. Orthologous to human CNOT9 (CCR4-NOT transcription complex subunit 9). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

    See ntl-9 in Genome Data Viewer
    Location:
    chromosome: III
    Exon count:
    6
    Sequence:
    Chromosome: III; NC_003281.10 (4944513..4947317)

    Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene F-box/SPRY domain-containing protein 1 Neighboring gene DNA-directed RNA polymerase II subunit RPB2 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by WormBase

    Process Evidence Code Pubs
    involved_in hemidesmosome assembly IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    involved_in mRNA catabolic process IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in negative regulation of translation IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Component Evidence Code Pubs
    part_of CCR4-NOT complex IEA
    Inferred from Electronic Annotation
    more info
     
    part_of CCR4-NOT core complex IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    is_active_in P-body IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in P-body IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    CCR4-NOT transcription complex subunit 9
    NP_001309488.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003281.10 Reference assembly

      Range
      4944513..4947317
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001322583.4NP_001309488.1  CCR4-NOT transcription complex subunit 9 [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q18224
      Conserved Domains (1) summary
      pfam04078
      Location:42315
      Rcd1; Cell differentiation family, Rcd1-like