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    T02C5.1 TNFR-Cys domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 180568, updated on 9-Dec-2024

    Summary

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    Official Symbol
    T02C5.1
    Official Full Name
    TNFR-Cys domain-containing protein
    Primary source
    WormBase:WBGene00020158
    Locus tag
    CELE_T02C5.1
    See related
    AllianceGenome:WB:WBGene00020158
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be located in membrane. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See T02C5.1 in Genome Data Viewer
    Location:
    chromosome: X
    Exon count:
    10
    Sequence:
    Chromosome: X; NC_003284.9 (2694923..2698273)

    Chromosome X - NC_003284.9Genomic Context describing neighboring genes Neighboring gene MICOS complex subunit MIC60-1 Neighboring gene ncRNA Neighboring gene Membrane-associated protein Neighboring gene Ig-like domain-containing protein Neighboring gene ncRNA Neighboring gene EF-hand domain-containing protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003284.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A combined binary interaction and phenotypic map of C. elegans cell polarity proteins. Koorman T, et al. Nat Cell Biol, 2016 Mar. PMID 26780296, Free PMC Article
    2. A protein domain-based interactome network for C. elegans early embryogenesis. Boxem M, et al. Cell, 2008 Aug 8. PMID 18692475, Free PMC Article
    3. A map of the interactome network of the metazoan C. elegans. Li S, et al. Science, 2004 Jan 23. PMID 14704431, Free PMC Article
    4. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    TNFR-Cys domain-containing protein
    NP_001024869.1
    • Confirmed by transcript evidence
    NP_001024870.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003284.9 Reference assembly

      Range
      2694923..2698273
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001029699.6 → NP_001024870.1  TNFR-Cys domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001024870.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      H2L0K1
      Conserved Domains (2) summary
      cd00185
      Location:31 → 65
      TNFRSF; CRD2 [structural motif]
      pfam00020
      Location:30 → 65
      TNFR_c6; TNFR/NGFR cysteine-rich region

    2. NM_001029698.7 → NP_001024869.1  TNFR-Cys domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001024869.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q22095
      Conserved Domains (2) summary
      cd00185
      Location:31 → 65
      TNFRSF; CRD2 [structural motif]
      pfam00020
      Location:30 → 65
      TNFR_c6; TNFR/NGFR cysteine-rich region
    Nucleotide Protein
    Heading Accession and Version

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