U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    gid-8 CTLH domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 178639, updated on 9-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    gid-8
    Official Full Name
    CTLH domain-containing protein
    Primary source
    WormBase:WBGene00018757
    Locus tag
    CELE_F53E2.1
    See related
    AllianceGenome:WB:WBGene00018757
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be involved in proteasome-mediated ubiquitin-dependent protein catabolic process. Located in nucleus. Is expressed in body wall musculature; nervous system; pharynx; reproductive system; and seam cell. Orthologous to human GID8 (GID complex subunit 8 homolog). [provided by Alliance of Genome Resources, Dec 2024]
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See gid-8 in Genome Data Viewer
    Location:
    chromosome: V
    Exon count:
    4
    Sequence:
    Chromosome: V; NC_003283.11 (1467744..1471105)

    Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene Solute carrier family 40 member Neighboring gene Prion-like-(Q/N-rich)-domain-bearing protein Neighboring gene Actin-depolymerizing factor 1 Neighboring gene Actin-depolymerizing factor 2 Neighboring gene non-specific serine/threonine protein kinase

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003283.11

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Determining the sub-cellular localization of proteins within Caenorhabditis elegans body wall muscle. Meissner B, et al. PLoS One, 2011. PMID 21611156, Free PMC Article
    2. OrthoList: a compendium of C. elegans genes with human orthologs. Shaye DD, et al. PLoS One, 2011. PMID 21647448, Free PMC Article
    3. OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes. Kim W, et al. Genetics, 2018 Oct. PMID 30120140, Free PMC Article
    4. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by WormBase

    Process Evidence Code Pubs
    involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in nucleus HDA PubMed 
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    CTLH domain-containing protein
    NP_001300116.1
    • Confirmed by transcript evidence
    NP_503424.2
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003283.11 Reference assembly

      Range
      1467744..1471105
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_071023.6 → NP_503424.2  CTLH domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_503424.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9UAU3
      Conserved Domains (4) summary
      smart00667
      Location:168 → 201
      LisH; Lissencephaly type-1-like homology motif
      smart00668
      Location:212 → 264
      CTLH; C-terminal to LisH motif
      smart00757
      Location:260 → 340
      CRA; CT11-RanBPM
      pfam10607
      Location:209 → 342
      CLTH; CTLH/CRA C-terminal to LisH motif domain

    2. NM_001313187.3 → NP_001300116.1  CTLH domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A0K3AUY3
      Conserved Domains (4) summary
      smart00667
      Location:5 → 38
      LisH; Lissencephaly type-1-like homology motif
      smart00668
      Location:49 → 101
      CTLH; C-terminal to LisH motif
      smart00757
      Location:97 → 177
      CRA; CT11-RanBPM
      pfam10607
      Location:46 → 179
      CLTH; CTLH/CRA C-terminal to LisH motif domain
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools