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    • Showing Current items.

    F18A1.7 Chondroitin proteoglycan 4 domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 174237, updated on 9-Dec-2024

    Summary

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    Official Symbol
    F18A1.7
    Official Full Name
    Chondroitin proteoglycan 4 domain-containing protein
    Primary source
    WormBase:WBGene00017548
    Locus tag
    CELE_F18A1.7
    See related
    AllianceGenome:WB:WBGene00017548
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Is expressed in germ line. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See F18A1.7 in Genome Data Viewer
    Location:
    chromosome: II
    Exon count:
    4
    Sequence:
    Chromosome: II; NC_003280.10 (7662706..7663754, complement)

    Chromosome II - NC_003280.10Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ALS/FTD Associated gene homolog Neighboring gene putative replication factor A 73 kDa subunit Neighboring gene C2H2-type domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003280.10

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Novel LOTUS-domain proteins are organizational hubs that recruit C. elegans Vasa to germ granules. Cipriani PG, et al. Elife, 2021 Jul 5. PMID 34223818, Free PMC Article
    2. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article
    3. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    Chondroitin proteoglycan 4 domain-containing protein
    NP_495605.2
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003280.10 Reference assembly

      Range
      7662706..7663754 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_063204.10 → NP_495605.2  Chondroitin proteoglycan 4 domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_495605.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q19536
      Conserved Domains (1) summary
      pfam15481
      Location:54 → 148
      CPG4; Chondroitin proteoglycan 4
    Nucleotide Protein
    Heading Accession and Version

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