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    NGA1 AP2/B3-like transcriptional factor family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 819300, updated on 18-Sep-2024

    Summary

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    Official Symbol
    NGA1
    Official Full Name
    AP2/B3-like transcriptional factor family protein
    Primary source
    TAIR:AT2G46870
    Locus tag
    AT2G46870
    See related
    Araport:AT2G46870
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F19D11.25; NGATHA1
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    Genomic context

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    See NGA1 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    1
    Sequence:
    Chromosome: 2; NC_003071.7 (19260906..19262533)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Protein kinase superfamily protein Neighboring gene pyrophosphorylase 3 Neighboring gene ncRNA Neighboring gene purple acid phosphatase 14

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis thaliana NGATHA1 transcription factor induces ABA biosynthesis by activating NCED3 gene during dehydration stress. Sato H, et al. Proc Natl Acad Sci U S A, 2018 Nov 20. PMID 30397148, Free PMC Article
    2. DNA recognition by Arabidopsis transcription factors ABI3 and NGA1. Sasnauskas G, et al. FEBS J, 2018 Nov. PMID 30183137
    3. Leaf expansion in Arabidopsis is controlled by a TCP-NGA regulatory module likely conserved in distantly related species. Ballester P, et al. Physiol Plant, 2015 Sep. PMID 25625546
    4. A transcriptional complex of NGATHA and bHLH transcription factors directs stigma development in Arabidopsis. Ballester P, et al. Plant Cell, 2021 Dec 3. PMID 34586419, Free PMC Article
    5. Active suppression of a leaf meristem orchestrates determinate leaf growth. Alvarez JP, et al. Elife, 2016 Oct 6. PMID 27710768, Free PMC Article

    See all (12) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. These results suggested that NGA1 essentially functions as a transcriptional activator of NCED3 among the NGA family proteins.
      Title: Arabidopsis thaliana NGATHA1 transcription factor induces ABA biosynthesis by activating NCED3 gene during dehydration stress.
    2. Data indicate that transcription factors TCP-NGA regulatory interaction is likely conserved in angiosperms, including important crop species.
      Title: Leaf expansion in Arabidopsis is controlled by a TCP-NGA regulatory module likely conserved in distantly related species.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_130254.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables sequence-specific DNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within flower development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within leaf development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within regulation of leaf morphogenesis IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    involved_in stigma development IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    AP2/B3-like transcriptional factor family protein
    NP_566089.1
    • NGATHA1 (NGA1); CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: AP2/B3-like transcriptional factor family protein (TAIR:AT3G61970.1); Has 1372 Blast hits to 1367 proteins in 72 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1372; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      19260906..19262533
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_130254.4 → NP_566089.1  AP2/B3-like transcriptional factor family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566089.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O82799
      UniProtKB/TrEMBL
      A0A178VXJ8, A0A5S9X842, A0A654F7S2, C3VMM2
      Conserved Domains (1) summary
      pfam02362
      Location:35 → 141
      B3; B3 DNA binding domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O82799.1

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