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    OFP16 ovate family protein 16 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 817770, updated on 18-Sep-2024

    Summary

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    Official Symbol
    OFP16
    Official Full Name
    ovate family protein 16
    Primary source
    TAIR:AT2G32100
    Locus tag
    AT2G32100
    See related
    Araport:AT2G32100
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATOFP16; F22D22.15; F22D22_15; ovate family protein 16; RABIDOPSIS THALIANA OVATE FAMILY PROTEIN 16
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    Genomic context

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    See OFP16 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    1
    Sequence:
    Chromosome: 2; NC_003071.7 (13647699..13649002)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Polynucleotidyl transferase, ribonuclease H-like superfamily protein Neighboring gene purin-rich alpha 1 Neighboring gene Lactoylglutathione lyase / glyoxalase I family protein Neighboring gene tRNA-Asn Neighboring gene heat-shock protein 70T-2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis ovate family proteins, a novel transcriptional repressor family, control multiple aspects of plant growth and development. Wang S, et al. PLoS One, 2011. PMID 21886836, Free PMC Article
    2. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article
    3. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_128770.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within negative regulation of DNA-templated transcription IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    ovate family protein 16
    NP_180770.1
    • ovate family protein 16 (OFP16); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF623 (InterPro:IPR006458); BEST Arabidopsis thaliana protein match is: ovate family protein 12 (TAIR:AT1G05420.1); Has 251 Blast hits to 251 proteins in 22 species: Archae - 0; Bacteria - 16; Metazoa - 0; Fungi - 0; Plants - 235; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      13647699..13649002
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_128770.3 → NP_180770.1  ovate family protein 16 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_180770.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A1A6L2, Q9SKY9
      UniProtKB/TrEMBL
      A0A178W325, A0A7G2EDQ8
      Conserved Domains (1) summary
      TIGR01568
      Location:165 → 238
      A_thal_3678; uncharacterized plant-specific domain TIGR01568
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SKY9.1

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