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    S-locus glycoprotein family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 816998, updated on 18-Sep-2024

    Summary

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    Official Full Name
    S-locus glycoprotein family protein
    Primary source
    TAIR:AT2G24620
    Locus tag
    AT2G24620
    See related
    Araport:AT2G24620
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F25P17.8; F25P17_8
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    1
    Sequence:
    Chromosome: 2; NC_003071.7 (10463076..10463959, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene cyclic nucleotide-gated channel 14 Neighboring gene Defensin-like (DEFL) family protein Neighboring gene uncharacterized protein Neighboring gene Defensin-like (DEFL) family protein Neighboring gene Glycosyl transferase family 2 protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_128023.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in recognition of pollen IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    S-locus glycoprotein family protein
    NP_180038.1
    • S-locus glycoprotein family protein; INVOLVED IN: recognition of pollen; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: S-locus glycoprotein (InterPro:IPR000858); BEST Arabidopsis thaliana protein match is: receptor kinase 1 (TAIR:AT1G65790.1); Has 1616 Blast hits to 1585 proteins in 70 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1616; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      10463076..10463959 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_128023.2 → NP_180038.1  S-locus glycoprotein family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_180038.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9SJA3
      Conserved Domains (1) summary
      pfam00954
      Location:51 → 154
      S_locus_glycop; S-locus glycoprotein domain
    Nucleotide Protein
    Heading Accession and Version

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