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    hypothetical protein (Protein of unknown function, DUF538) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 839881, updated on 18-Sep-2024

    Summary

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    Official Full Name
    hypothetical protein (Protein of unknown function, DUF538)
    Primary source
    TAIR:AT1G30020
    Locus tag
    AT1G30020
    See related
    Araport:AT1G30020
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T1P2.11; T1P2_11
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    1
    Sequence:
    Chromosome: 1; NC_003070.9 (10515874..10516347, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene prefoldin 6 Neighboring gene alpha-mannosidase 3 Neighboring gene Intron maturase, type II family protein Neighboring gene pseudo Neighboring gene gibberellin 2-oxidase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Involvement of ABA Responsive SVB Genes in the Regulation of Trichome Formation in Arabidopsis. Hussain S, et al. Int J Mol Sci, 2021 Jun 24. PMID 34202673, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_102742.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    hypothetical protein (Protein of unknown function, DUF538)
    NP_174295.1
    • Protein of unknown function, DUF538; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF538 (InterPro:IPR007493); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF538 (TAIR:AT5G46230.1); Has 339 Blast hits to 339 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 339; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      10515874..10516347 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_102742.1 → NP_174295.1  hypothetical protein (Protein of unknown function, DUF538) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_174295.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9C8R7
      Conserved Domains (1) summary
      pfam04398
      Location:29 → 114
      DUF538; Protein of unknown function, DUF538
    Nucleotide Protein
    Heading Accession and Version

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