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    haloacid dehalogenase-like hydrolase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 842103, updated on 18-Sep-2024

    Summary

    Official Full Name
    haloacid dehalogenase-like hydrolase family protein
    Primary source
    TAIR:AT1G56500
    Locus tag
    AT1G56500
    See related
    Araport:AT1G56500
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AT1G56505; F13N6.21; F13N6_21; SOQ1; suppressor of quenching 1
    Summary
    Encodes a thylakoid membrane protein with thioredoxin-like and beta-propeller domains located in the lumen and a haloacid-dehalogenase domain exposed to the chloroplast stroma. The protein's role may be to prevent formation of a slowly reversible form of antenna quenching, thereby maintaining the efficiency of light harvesting.
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    Genomic context

    Location:
    chromosome: 1
    Exon count:
    27
    Sequence:
    Chromosome: 1; NC_003070.9 (21159736..21167341)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene miscRNA Neighboring gene Disease resistance protein (TIR-NBS-LRR class) Neighboring gene Disease resistance protein (TIR-NBS-LRR class) family

    General protein information

    Preferred Names
    haloacid dehalogenase-like hydrolase family protein
    NP_564718.2
    • haloacid dehalogenase-like hydrolase family protein; FUNCTIONS IN: hydrolase activity, oxidoreductase activity, catalytic activity; INVOLVED IN: metabolic process, cell redox homeostasis; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Haloacid dehydrogenase/epoxide hydrolase (InterPro:IPR005833), Low-density lipoprotein receptor, class B (YWTD) repeat (InterPro:IPR000033), Thioredoxin fold (InterPro:IPR012335), Six-bladed beta-propeller, TolB-like (InterPro:IPR011042), Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), Thioredoxin-like (InterPro:IPR017936), NHL repeat (InterPro:IPR001258), Thioredoxin-like fold (InterPro:IPR012336), Redoxin (InterPro:IPR013740), HAD-superfamily hydrolase, subfamily IA, variant 3 (InterPro:IPR006402); BEST Arabidopsis thaliana protein match is: NHL domain-containing protein (TAIR:AT3G07060.1); Has 23445 Blast hits to 20574 proteins in 2565 species: Archae - 340; Bacteria - 17044; Metazoa - 1036; Fungi - 332; Plants - 721; Viruses - 3; Other Eukaryotes - 3969 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      21159736..21167341
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001333783.1NP_001321116.1  haloacid dehalogenase-like hydrolase family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WG82
    2. NM_001333784.1NP_001321117.1  haloacid dehalogenase-like hydrolase family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WDB7
    3. NM_104525.3NP_564718.2  haloacid dehalogenase-like hydrolase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_564718.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0A1P8APV3, A0A1P8APY8, C0Z278, Q0WQ65, Q8GX08, Q8L9X3, Q8VZ10, Q9C7X1
      UniProtKB/TrEMBL
      A0A5S9WMX8
      Conserved Domains (1) summary
      PLN02919
      Location:11055
      PLN02919; haloacid dehalogenase-like hydrolase family protein